Your message dated Wed, 10 Jun 2026 05:18:37 +0000
with message-id <[email protected]>
and subject line Bug#1136241: fixed in iqtree3 3.1.1+dfsg-2
has caused the Debian Bug report #1136241,
regarding iqtree3: FTBFS with libeigen3-dev 5.0 (major version transition)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1136241: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1136241
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
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Hash: SHA512
Package: src:iqtree3
Version: 3.1.1+dfsg-1
Severity: important
Tags: sid forky ftbfs
User: [email protected]
Usertags: eigen3-5.0
Dear Maintainer,
your package depends on libeigen3-dev. The upstream released a
new major version of this mathematical library, 5.0.0. Some
basic information about new features and changes in this version
can be found here:
https://libeigen.gitlab.io/releases/5.0/
This is a major version change and may require code changes in packages
depending on eigen3. The key breaking changes include:
- Minimum required C++ standard is now C++14
- Changes in the build system integration
- Some API name changes
iqtree3 FTBFS with libeigen3-dev 5.0.1. The full build log is available at:
https://debusine.debian.net/debian/developers-gladk-eigen3/artifact/3756398/
Here is the most probably relevant part of the failing build log:
===========================================
- -- Detecting CXX compile features - done
CMake Error at CMakeLists.txt:93 (message):
Eigen3 library not found. Either install it or rerun cmake with
-DEIGEN3_INCLUDE_DIR=<installed_eigen3_dir>
- -- Configuring incomplete, errors occurred!
cd build.omp && tail -v -n \+0 CMakeCache.txt
==> CMakeCache.txt <==
# This is the CMakeCache file.
===========================================
libeigen3-dev_5.0.1-1 is available in experimental.
When this package version lands into unstable (probably at the beginning
of June 2026), this bug will be increased in severity to serious.
Thanks,
Anton
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--- Begin Message ---
Source: iqtree3
Source-Version: 3.1.1+dfsg-2
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
iqtree3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated iqtree3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Format: 1.8
Date: Tue, 09 Jun 2026 22:21:38 +0200
Source: iqtree3
Architecture: source
Version: 3.1.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1136241
Changes:
iqtree3 (3.1.1+dfsg-2) unstable; urgency=medium
.
* Build using Libeigen 5.0
Closes: #1136241
* d/watch: Use auto for Dversion-Mangle
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