Your message dated Fri, 12 Jun 2026 14:34:22 +0000
with message-id <[email protected]>
and subject line Bug#1136320: fixed in qtltools 1.3.1+dfsg-5
has caused the Debian Bug report #1136320,
regarding qtltools: FTBFS with libeigen3-dev 5.0 (major version transition)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1136320: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1136320
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Package: src:qtltools
Version: 1.3.1+dfsg-4
Severity: important
Tags: sid forky ftbfs
User: [email protected]
Usertags: eigen3-5.0
Dear Maintainer,
your package depends on libeigen3-dev. The upstream released a
new major version of this mathematical library, 5.0.0. Some
basic information about new features and changes in this version
can be found here:
https://libeigen.gitlab.io/releases/5.0/
This is a major version change and may require code changes in packages
depending on eigen3. The key breaking changes include:
- Minimum required C++ standard is now C++14
- Changes in the build system integration
- Some API name changes
qtltools FTBFS with libeigen3-dev 5.0.1. The full build log is available at:
https://debusine.debian.net/debian/developers-gladk-eigen3/artifact/3761106/raw/qtltools_1.3.1+dfsg-4_amd64-2026-05-08T16:04:53Z.build
Here is the most probably relevant part of the failing build log:
===========================================
g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra
-Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated
-Wno-unused-parameter -g -O2
-ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra
-Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated
-Wno-unused-parameter -g -O2
-ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/eigen3 -Ilib/OTools -Ilib
g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3
-Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated
-Wno-unused-parameter -g -O2
-ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/eigen3 -Ilib/OTools -Ilib
In file included from /usr/include/eigen3/Eigen/Core:22,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_management.cpp:16:
/usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen
requires at least c++14 support.
749 | #error Eigen requires at least c++14 support.
| ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:22,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60,
from src/common/data.h:19,
from src/common/data.cpp:16:
/usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen
requires at least c++14 support.
749 | #error Eigen requires at least c++14 support.
| ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:22,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60,
from src/mode_ase/../common/data.h:19,
from src/mode_ase/ase_data.h:20,
from src/mode_ase/ase_main.cpp:16:
/usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen
requires at least c++14 support.
749 | #error Eigen requires at least c++14 support.
| ^~~~~
In file included from /usr/include/eigen3/Eigen/Core:22,
from /usr/include/eigen3/Eigen/Dense:1,
from lib/OTools/residualizer.h:36,
from lib/OTools/otools.h:60,
from src/mode_cis/../common/data.h:19,
from src/mode_cis/cis_data.h:33,
from src/QTLtools.cpp:16:
===========================================
libeigen3-dev_5.0.1-1 is available in experimental.
When this package version lands into unstable (probably at the beginning
of June 2026), this bug will be increased in severity to serious.
Thanks,
Anton
-----BEGIN PGP SIGNATURE-----
iQIzBAEBCAAdFiEEu71F6oGKuG/2fnKF0+Fzg8+n/wYFAmoCPvEACgkQ0+Fzg8+n
/wZpzA//epb1SgbyFKkVlVYEzR8sU/a9qG0i2fcDILp/qifvcEiyoKL/PKNTUixC
rxCnV7YbLfCDH+ec6f7iv+8VRNtBtEJhzEw0TkSUFFbY7x+HbhKlookmaQXaKu6u
Jd1gJM9dj8lsRBNCRempG5f8X/MfR42DCQlr/s1zMwT0oc0nHFbkRpnRYsmxlL4S
VT5tQKuUdzHTwfBV1blKeeWwEmJADnGzEdNF5YOHYCKmWJLyi6IzlmcakAcMyxiS
m37f718MuCEWEfonS0Xg/SuQqRj4+1u5YJuTN9nafsx9uhCMADBeNiRY2hIkSmTq
RqdJY6z2IC01Y29EyWUKPc9WVe248YeAnEjeTFkDr0aONL0wN59N12EHXyiH9SMB
vvdLx82cNL6xz8h5RCaaT6hAGXTggkXnBNgHXtWMQDiFQf6avQUyxJoG18KrMwQv
ZUtYyBPGzmak/625r82/XmdIpbaVCdHj3G3DUomhYVKW9kNeoyPYibPRGKCYtJrG
zf6NwaiwsvwJV1nGhE+7MfeUu48zqrffsMtN6UaokFgLjzowL8ziisPQrEF1JAkg
DKGaqA4RIXC/+kxn3sVk6/QuvT937bPaQykHJxEux3LnaEZ+a6wbRZat2f4O0T2b
2zFcHZg2bqDhQtDBo9DQJ4IQsno4Hm9svKfVUgQsWDA1sDFCNgA=
=4ENe
-----END PGP SIGNATURE-----
--- End Message ---
--- Begin Message ---
Source: qtltools
Source-Version: 1.3.1+dfsg-5
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
qtltools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated qtltools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 12 Jun 2026 15:33:47 +0200
Source: qtltools
Architecture: source
Version: 1.3.1+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1136320
Changes:
qtltools (1.3.1+dfsg-5) unstable; urgency=medium
.
* Team upload.
* d/watch: version=5
* Libeigen 5.0 has minimum requirement of c++14
Closes: #1136320
* Standards-Version: 4.7.4 (routine-update)
* Reflow Uploaders field (cme)
* Remove Priority field (cme)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* Replace FSF postal address with a reference to
https://www.gnu.org/licenses/.
* debputy lint --auto-fix (routine-update)
* Add missing copyright for src/mode_quan/quan_xxhash.h
Checksums-Sha1:
b3edcbee1a5a82bbad56f86bd6bed584375029b2 2215 qtltools_1.3.1+dfsg-5.dsc
0606ad2fb8cc218ffe2c57a764cc24ad24ee7b6f 13555872
qtltools_1.3.1+dfsg-5.debian.tar.xz
46cff9e02618a047ea257f6df2113aac39a82df4 8962
qtltools_1.3.1+dfsg-5_amd64.buildinfo
Checksums-Sha256:
03badc04ec6fe8ebd9dda3d18620c29e4ad42f655fdaaa6ec511a839a23f4144 2215
qtltools_1.3.1+dfsg-5.dsc
762f9831d946cabb37794e225dbff58e73ee474a41e2ed7b59e5645ab53d6cba 13555872
qtltools_1.3.1+dfsg-5.debian.tar.xz
401e59dab9c47c24be89c780fad19bf9250f4a594e5558d9c6ff2faba5e73afa 8962
qtltools_1.3.1+dfsg-5_amd64.buildinfo
Files:
e9b27de050c8cfe5ad562dd907457e3c 2215 science optional
qtltools_1.3.1+dfsg-5.dsc
21899ff674353a6e1d137196647ea15a 13555872 science optional
qtltools_1.3.1+dfsg-5.debian.tar.xz
9b2dc95c634f64f01b71de056cbb025d 8962 science optional
qtltools_1.3.1+dfsg-5_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----
iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmosFAwRHHRpbGxlQGRl
Ymlhbi5vcmcACgkQV4oElNHGRtGmLhAAgUPDmaeN83aURcl0CoOX8JdhLUeC7nKC
u6rLXJz3PyYiR7ZoV+IIB1HaSpw5Oykhuu1pd3n1jJmczsjEmLihRrIn9kcVc9uf
v2rPq9Pb5bNRgf/SqXBwXl6FJ00Ts6DOavlKH60EE1fOD10CcsmQDzuHuZbRO7+v
lz/T397lT+n6AIRE402S64I4UmLuc+xH7+OAE+/Iphss7uRwhcCD/D/teeN/L0te
db1B1i+izb7ruF9pUqQ1uxdZs1jyT90Ff8A/Oj0fXcRJntVJjBTlDoH3wab4yGCZ
u4VarvyxkzbukE637PzWOy7nAOQzgCixPbaGO46ZsmVJtfmXqtfhOhOFqLWYukPP
SbHhAvLU4Fh26e1s9Or4g+XAUAOUaGUnIKTpo41zV2WzQI6g2Pn2sqB/xlIDMp8o
fudVM+3R2ek6fCMx+4ch1LFeU+WW24BqpoqqXgOZe3CkLL41SAMBtRdklshtTxdJ
1Z8lEhAIdz3X0y47IP1iYUBEVcIQ7DhQbBBxZGx6Vw/PXuybs7eOHoSDXNjQU9AR
DxA/y0HJh5y6KctU7I2SXyuYVfHL3eE/BHF5fbxgGdAHSqpHqvMA6vfKKik7E022
VHbymhw7Cd4dJCBbsoSpMEadtIX61Vfh+pzv37wkBkIRsk4E6dUY+nkmo3OXVH/q
5KBOP9Vxlps=
=zcJf
-----END PGP SIGNATURE-----
pgprbeTXnxUYh.pgp
Description: PGP signature
--- End Message ---
