Your message dated Mon, 15 Jun 2026 15:49:19 +0000
with message-id <[email protected]>
and subject line Bug#1139607: fixed in mapsembler2 2.2.4+dfsg1-7
has caused the Debian Bug report #1139607,
regarding mapsembler2: FTBFS against HDF5 2.1.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1139607: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mapsembler2
Version: 2.2.4+dfsg1-6
Severity: important
Tags: ftbfs patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, mapsembler2 FTBFS because its build toolchain
doesn't support this new major release.
The attached patch is a workaround for this issue and supports both
HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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diff -Nru mapsembler2-2.2.4+dfsg1/debian/changelog
mapsembler2-2.2.4+dfsg1/debian/changelog
--- mapsembler2-2.2.4+dfsg1/debian/changelog 2026-04-28 14:51:08.000000000
+0200
+++ mapsembler2-2.2.4+dfsg1/debian/changelog 2026-06-01 17:29:09.000000000
+0200
@@ -1,3 +1,10 @@
+mapsembler2 (2.2.4+dfsg1-6.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <[email protected]> Mon, 01 Jun 2026 17:29:09 +0200
+
mapsembler2 (2.2.4+dfsg1-6) unstable; urgency=medium
* Fix build with CMake 4
diff -Nru mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch
mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch
--- mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch 1970-01-01
01:00:00.000000000 +0100
+++ mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch 2026-06-01
17:29:09.000000000 +0200
@@ -0,0 +1,12 @@
+Index:
mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt
+===================================================================
+---
mapsembler2-2.2.4+dfsg1.orig/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt
++++
mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt
+@@ -221,7 +221,6 @@ ADD_SUBDIRECTORY(thirdparty)
+ find_package (HDF5 REQUIRED)
+ if (HDF5_FOUND)
+ include_directories (${HDF5_INCLUDE_DIRS})
+- set (gatb-core-libraries ${gatb-core-libraries} ${HDF5_LIBRARIES})
+ set (gatb-core-libraries ${gatb-core-libraries} PARENT_SCOPE)
+ endif()
+
diff -Nru mapsembler2-2.2.4+dfsg1/debian/patches/series
mapsembler2-2.2.4+dfsg1/debian/patches/series
--- mapsembler2-2.2.4+dfsg1/debian/patches/series 2026-04-28
14:51:08.000000000 +0200
+++ mapsembler2-2.2.4+dfsg1/debian/patches/series 2026-06-01
17:29:09.000000000 +0200
@@ -11,3 +11,4 @@
cross.patch
gcc11.patch
cmake4.patch
+hdf5-2.1.0.patch
--- End Message ---
--- Begin Message ---
Source: mapsembler2
Source-Version: 2.2.4+dfsg1-7
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mapsembler2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mapsembler2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 15 Jun 2026 17:11:23 +0200
Source: mapsembler2
Architecture: source
Version: 2.2.4+dfsg1-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1139607
Changes:
mapsembler2 (2.2.4+dfsg1-7) unstable; urgency=medium
.
[ Gilles Filippini ]
* Fix FTBFS against HDF5 2.1.0
Closes: #1139607
.
[ Andreas Tille ]
* Remove trailing whitespace in debian/changelog (routine-update)
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