Your message dated Wed, 24 Jun 2026 11:04:59 +0000
with message-id <[email protected]>
and subject line Bug#1122324: fixed in python-pbcore 2.1.2+dfsg-14
has caused the Debian Bug report #1122324,
regarding python-pbcore: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1122324: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1122324
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-pbcore
Version: 2.1.2+dfsg-13
Severity: serious
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202512/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/nocheck
(It's a wiki, so you are welcome to contribute)
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-pbcore, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__init__.py
to __init__.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/base.py
to base.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/__init__.py
to __init__.cpython-313.pyc
running install_egg_info
Copying pbcore.egg-info to
/<<PKGBUILDDIR>>/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore-2.2.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing .open script to /<<PKGBUILDDIR>>/debian/python3-pbcore/usr/bin
I: pybuild pybuild:334: chmod -x
/<<PKGBUILDDIR>>/debian/python3-pbcore//usr/lib/python3.13/dist-packages/pbcore/data/datasets/*.xml
debian/rules execute_before_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p _tmp/usr/share/doc/python3-pbcore
cp -a tests _tmp/usr/share/doc/python3-pbcore
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -O--buildsystem=pybuild
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv /<<PKGBUILDDIR>>/debian/python3-pbcore/usr/bin/.open
/<<PKGBUILDDIR>>/debian/python3-pbcore/usr/bin/pbopen
rmdir
/<<PKGBUILDDIR>>/debian/python-pbcore-doc/usr/share/doc/python3-pbcore/html/_images/
rmdir: failed to remove
'/<<PKGBUILDDIR>>/debian/python-pbcore-doc/usr/share/doc/python3-pbcore/html/_images/':
No such file or directory
make[1]: *** [debian/rules:30: execute_after_dh_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:19: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-pbcore
Source-Version: 2.1.2+dfsg-14
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-pbcore, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated python-pbcore package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 24 Jun 2026 11:50:00 +0200
Source: python-pbcore
Architecture: source
Version: 2.1.2+dfsg-14
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1122324
Changes:
python-pbcore (2.1.2+dfsg-14) unstable; urgency=medium
.
* Team upload.
.
[ Santiago Vila ]
* Drop <!nocheck> from python3-biopython. Closes: #1122324.
* Drop "Priority: optional" (default).
* Update standards-version.
* Fine-tune salsa-ci.yml.
.
[ Michael R. Crusoe ]
* Update debian/gbp.conf.
.
[ Andreas Tille ]
* Switch watch file to version 5.
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