Your message dated Sun, 05 Jul 2026 17:49:39 +0000
with message-id <[email protected]>
and subject line Bug#1139554: fixed in xmds2 3.1.0+dfsg3-1
has caused the Debian Bug report #1139554,
regarding xmds2: FTBFS against HDF5 2.1.0 - The waf toolchain has to be adapted
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1139554: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139554
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: xmds2
Version: 3.1.0+dfsg2-13
Severity: important
Tags: ftbfs
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependcies against HDF5 2.1.0
currently in experimental, xmds2 FTBFS with:
Checking for program 'h5cc' : /usr/bin/h5cc
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/bin-test/xmds2", line 4, in <module>
sys.exit(parser2.main())
~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/parser2.py", line 219, in main
return Configuration.run_reconfig(includePaths, libPaths)
~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 145, in run_reconfig
return run_config(includePaths = includePaths, libPaths = libPaths)
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 119, in run_config
ret = ctx.execute()
File "/<<PKGBUILDDIR>>/xpdeint/waf/waflib/Configure.py", line 159, in execute
super(ConfigurationContext, self).execute()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/waf/waflib/Context.py", line 204, in execute
self.recurse([os.path.dirname(g_module.root_path)])
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 56, in <lambda>
lambda x, y: getattr(Context.g_module, x.cmd or x.fun, Utils.nada)(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^
File "/<<PKGBUILDDIR>>/xpdeint/Configuration.py", line 85, in _
return f(ctx, *args, **kw)
File "/<<PKGBUILDDIR>>/xpdeint/support/wscript", line 754, in configure
configure_compiler()
~~~~~~~~~~~~~~~~~~^^
File "/<<PKGBUILDDIR>>/xpdeint/support/wscript", line 411, in
configure_compiler
hdf5_libpath = re.search(r'\s-L(\S+)', h5cc_shared_flags).group(1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'group'
I tried to poke into the xpdeint/support/wscript file; but while xmds2 seems
to build successfully many tests fail then. So I let it to the maintainer of
the package :)
Don't hesitate to reach if needed, as I am in touch with HDF5 devs and
they are willing to help.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
-----BEGIN PGP SIGNATURE-----
iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmooDZgACgkQ7+hsbH/+
z4OVagf/WS1Ms6g3LmIqrnu5sUZ6Wb+eFb8BomhmRB2YWPhpAjhRhoSkQaEbAO21
TsQ8vHx0Z8RQxkCBxJwt9+tjSvXEX7NCWMJ5lkh7nkOJY/eW2EUgtf5zG2tod02R
040ZwegD83SYlL0+d4yBfF7cnMEk9H0541aZKXKqymSf0At5wnPrrsUoIWxnO5g+
PXZdbXyyMmER3Okrnzn6hEdWsjpFhfnuAdsSa0mlxTPn5MezO1OllqvWKlU999O+
rbCD2UHw3zTf8g4c1Hu/BQ6YN3SNGJ/uQ0Gmk7sQEGJnwRIEa+NJZ0axul6/MWK3
gsXbwMUHMzVRL2KWPR0cTFTjxwk5Hw==
=nljZ
-----END PGP SIGNATURE-----
--- End Message ---
--- Begin Message ---
Source: xmds2
Source-Version: 3.1.0+dfsg3-1
Done: Rafael Laboissière <[email protected]>
We believe that the bug you reported is fixed in the latest version of
xmds2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Rafael Laboissière <[email protected]> (supplier of updated xmds2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 05 Jul 2026 13:20:15 +0000
Source: xmds2
Architecture: source
Version: 3.1.0+dfsg3-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Rafael Laboissière <[email protected]>
Closes: 1139554
Changes:
xmds2 (3.1.0+dfsg3-1) experimental; urgency=medium
.
[ Rafael Laboissière ]
* New repackaged upstream tarball.
For some unknown reason, the upstream tarballs in the dgit and the
Salsa repositories became disaligned. Hence this new "upstream version".
* d/control:
+ Bump Standards-Version to 4.7.4 (no changes needed)
+ Bump Debhelper compatibility level to 14
.
[ Gilles Filippini ]
* d/patches/hdf5-2.1.0.patch: New patch (Closes: #1139554)
Checksums-Sha1:
0a88a077e9964f63e81144bf85727bae78f8b86c 3147 xmds2_3.1.0+dfsg3-1.dsc
8ab545e17915acfeb336edca39da3b5719d33f57 7142740
xmds2_3.1.0+dfsg3.orig-userdoc.tar.xz
a186c3796451b6eaaa5930a2f7cc5779cbe29b27 12157656 xmds2_3.1.0+dfsg3.orig.tar.xz
a3068a34811eacc47c48bc57ac65439f581c1886 21572
xmds2_3.1.0+dfsg3-1.debian.tar.xz
Checksums-Sha256:
3927f348880735e5f1dbf8727d90915c10477e7c6be4012098952c4a3602831f 3147
xmds2_3.1.0+dfsg3-1.dsc
fc33f07c5d31e4d4d6690c5d485af6e1af492b17a6f0ce6e432681cb4a97f1ad 7142740
xmds2_3.1.0+dfsg3.orig-userdoc.tar.xz
a6aa2eab548276da5052b385fca407580c023c5e79d45bf38a194775db6c686c 12157656
xmds2_3.1.0+dfsg3.orig.tar.xz
543eb1764240f873959780daeba2c15112a0396a90ff642625e66b481eae235c 21572
xmds2_3.1.0+dfsg3-1.debian.tar.xz
Files:
f53c903a5246f1da7ea8dd402beebc61 3147 science optional xmds2_3.1.0+dfsg3-1.dsc
b4da769cb32221319797fd016f690f9a 7142740 science optional
xmds2_3.1.0+dfsg3.orig-userdoc.tar.xz
b8036ee8236e58b3c392c84a53fcb5bc 12157656 science optional
xmds2_3.1.0+dfsg3.orig.tar.xz
da339159d447e3166cc22adab8d2ec2f 21572 science optional
xmds2_3.1.0+dfsg3-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=YZEZ
-----END PGP SIGNATURE-----
pgprAhfLhBwk9.pgp
Description: PGP signature
--- End Message ---
