Your message dated Thu, 30 Jul 2026 19:02:11 +0000
with message-id <[email protected]>
and subject line Bug#1139612: fixed in slurm-wlm-contrib 26.5.1-1
has caused the Debian Bug report #1139612,
regarding slurm-wlm-contrib: FTBFS against HDF5 2.1.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1139612: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: slurm-wlm-contrib
Version: 25.11.4-1
Severity: important
Tags: ftbfs patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, slurm-wlm-contrib FTBFS because its build
toolchain doesn't support this new major release.
The attached patch is a workaround for this issue and supports both
HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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diff -Nru slurm-wlm-contrib-25.11.4/debian/changelog
slurm-wlm-contrib-25.11.4/debian/changelog
--- slurm-wlm-contrib-25.11.4/debian/changelog 2026-03-19 22:18:24.000000000
+0100
+++ slurm-wlm-contrib-25.11.4/debian/changelog 2026-06-05 14:37:46.000000000
+0200
@@ -1,3 +1,10 @@
+slurm-wlm-contrib (25.11.4-1.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <[email protected]> Fri, 05 Jun 2026 14:37:46 +0200
+
slurm-wlm-contrib (25.11.4-1) unstable; urgency=medium
* New upstream release
diff -Nru slurm-wlm-contrib-25.11.4/debian/patches/hdf5-2.1.0.patch
slurm-wlm-contrib-25.11.4/debian/patches/hdf5-2.1.0.patch
--- slurm-wlm-contrib-25.11.4/debian/patches/hdf5-2.1.0.patch 1970-01-01
01:00:00.000000000 +0100
+++ slurm-wlm-contrib-25.11.4/debian/patches/hdf5-2.1.0.patch 2026-06-05
14:37:46.000000000 +0200
@@ -0,0 +1,49 @@
+Index: slurm-wlm-25.11.4/auxdir/ax_lib_hdf5.m4
+===================================================================
+--- slurm-wlm-25.11.4.orig/auxdir/ax_lib_hdf5.m4
++++ slurm-wlm-25.11.4/auxdir/ax_lib_hdf5.m4
+@@ -237,7 +237,15 @@ HDF5 support is being disabled (equivale
+ esac
+ done
+
+- HDF5_LIBS="-lhdf5 $HDF5_LIBS"
++ HDF5_LIBS="${HDF5_LIBS#"${HDF5_LIBS%%[![:space:]]*}"}"
++ HDF5_INFIX=
++ case "$HDF5_LIBS" in
++ -lhdf5_*)
++ HDF5_INFIX="${HDF5_LIBS#-lhdf5_}"
++ HDF5_INFIX="_${HDF5_INFIX%%_*}"
++ ;;
++ esac
++ HDF5_LIBS="-lhdf5$HDF5_INFIX $HDF5_LIBS"
+ AC_MSG_RESULT([yes (version $[HDF5_VERSION])])
+
+ dnl See if we can compile
+@@ -251,13 +259,13 @@ HDF5 support is being disabled (equivale
+ LIBS=$HDF5_LIBS
+ LDFLAGS=$HDF5_LDFLAGS
+ AC_CHECK_HEADER([hdf5.h], [ac_cv_hadf5_h=yes], [ac_cv_hadf5_h=no])
+- AC_CHECK_LIB([hdf5], [H5Fcreate], [ac_cv_libhdf5=yes],
++ AC_CHECK_LIB([hdf5${HDF5_INFIX}], [H5Fcreate], [ac_cv_libhdf5=yes],
+ [ac_cv_libhdf5=no])
+ if test "$ac_cv_hadf5_h" = "no" && test "$ac_cv_libhdf5" = "no" ; then
+ AC_MSG_WARN([Unable to compile HDF5 test program])
+ fi
+ dnl Look for HDF5's high level library
+- AC_CHECK_LIB([hdf5_hl], [main], [HDF5_LIBS="-lhdf5_hl $HDF5_LIBS"],
[])
++ AC_CHECK_LIB([hdf5${HDF5_INFIX}_hl], [main],
[HDF5_LIBS="-lhdf5${HDF5_INFIX}_hl $HDF5_LIBS"], [])
+
+ CC=$ax_lib_hdf5_save_CC
+ CPPFLAGS=$ax_lib_hdf5_save_CPPFLAGS
+@@ -294,9 +302,9 @@ HDF5 support is being disabled (equivale
+ for arg in $HDF5_LIBS
+ do
+ case "$arg" in #(
+- -lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5hl_fortran $arg"
++ -lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS
-lhdf5${HDF5_INFIX}_hl_fortran $arg"
+ ;; #(
+- -lhdf5) HDF5_FLIBS="$HDF5_FLIBS -lhdf5_fortran $arg"
++ -lhdf5) HDF5_FLIBS="$HDF5_FLIBS
-lhdf5${HDF5_INFIX}_fortran $arg"
+ ;; #(
+ *) HDF5_FLIBS="$HDF5_FLIBS $arg"
+ ;;
diff -Nru slurm-wlm-contrib-25.11.4/debian/patches/series
slurm-wlm-contrib-25.11.4/debian/patches/series
--- slurm-wlm-contrib-25.11.4/debian/patches/series 2026-03-19
22:18:24.000000000 +0100
+++ slurm-wlm-contrib-25.11.4/debian/patches/series 2026-06-05
14:37:46.000000000 +0200
@@ -7,3 +7,4 @@
retry-getaddrinfo
force-nvml
fix-manpage-groff-warnings
+hdf5-2.1.0.patch
--- End Message ---
--- Begin Message ---
Source: slurm-wlm-contrib
Source-Version: 26.5.1-1
Done: Gennaro Oliva <[email protected]>
We believe that the bug you reported is fixed in the latest version of
slurm-wlm-contrib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gennaro Oliva <[email protected]> (supplier of updated slurm-wlm-contrib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 26 Jul 2026 23:43:37 +0200
Source: slurm-wlm-contrib
Binary: slurm-wlm-nvml-plugin slurm-wlm-nvml-plugin-dbgsym
slurm-wlm-nvml-plugin-dev
Architecture: source amd64
Version: 26.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Gennaro Oliva <[email protected]>
Changed-By: Gennaro Oliva <[email protected]>
Description:
slurm-wlm-nvml-plugin - SLURM NVML plugins
slurm-wlm-nvml-plugin-dev - SLURM NVML plugin development files
Closes: 1137761 1139612
Changes:
slurm-wlm-contrib (26.5.1-1) unstable; urgency=medium
.
* New upstream release
* Update patches
* Drop default-libmysqlclient-dev dep (Closes: #1137761)
.
[ Gilles Filippini ]
* Fix FTBFS against HDF5 2.1.0 (Closes: #1139612)
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