Your message dated Sat, 08 Aug 2026 08:19:54 +0000
with message-id <[email protected]>
and subject line Bug#1143882: fixed in infernal 1.1.5-4
has caused the Debian Bug report #1143882,
regarding infernal: Does not ship esl-alimerge
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1143882: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1143882
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: infernal
Version: 1.1.5-3
Severity: normal
X-Debbugs-Cc: [email protected]
Dear Maintainer,
A quote from cmalign(1):
It is possible to merge two or more alignments created by the same CM us‐
ing the Easel miniapp esl-alimerge (included in the easel/miniapps/ subdi‐
rectory of Infernal). Previous versions of cmalign included options to
merge alignments but they were deprecated upon development of esl-al‐
imerge, which is significantly more memory efficient.
However, no such app is shipped:
~$ dpkg -L infernal | grep miniapps
/usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps
/usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-reformat
/usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-sfetch
/usr/lib/x86_64-linux-gnu/infernal/examples/easel/miniapps/esl-shuffle
~$ dpkg -L infernal | grep alimerge
(empty)
But it would be really handy!
-- System Information:
Debian Release: forky/sid
APT prefers testing
APT policy: (900, 'testing'), (800, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 7.1.6+deb14-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages infernal depends on:
ii libc6 2.42-17
infernal recommends no packages.
infernal suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: infernal
Source-Version: 1.1.5-4
Done: Charles Plessy <[email protected]>
We believe that the bug you reported is fixed in the latest version of
infernal, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated infernal package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 08 Aug 2026 16:28:11 +0900
Source: infernal
Architecture: source
Version: 1.1.5-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Closes: 1143882
Changes:
infernal (1.1.5-4) unstable; urgency=medium
.
[ Michael R. Crusoe ]
* d/bin/cmalign: make machine architecture query quieter and not reliant
on the non-essential package dpkg-dev.
.
[ Charles Plessy ]
* Install all easel miniapps. Closes: #1143882. Please note that the
files might distirbuted via the hmmer package in future.
* Standards-Version: 4.7.4 (routine-update)
* Reflow Uploaders field (cme)
* Remove Priority field (cme)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* Replace FSF postal address with a reference to
https://www.gnu.org/licenses/.
* Set upstream metadata fields: Bug-Submit.
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Git-Tag-Tagger: Charles Plessy <[email protected]>
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