Your message dated Tue, 08 Sep 2026 10:19:10 +0000
with message-id <[email protected]>
and subject line Bug#1136322: fixed in rdkit 202603.4-2
has caused the Debian Bug report #1136322,
regarding rdkit: FTBFS with libeigen3-dev 5.0 (major version transition)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1136322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1136322
Debian Bug Tracking System
Contact [email protected] with problems
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Hash: SHA256
Package: src:rdkit
Version: 202503.6-4
Severity: important
Tags: sid forky ftbfs
User: [email protected]
Usertags: eigen3-5.0
Dear Maintainer,
your package depends on libeigen3-dev. The upstream released a
new major version of this mathematical library, 5.0.0. Some
basic information about new features and changes in this version
can be found here:
https://libeigen.gitlab.io/releases/5.0/
This is a major version change and may require code changes in packages
depending on eigen3. The key breaking changes include:
- Minimum required C++ standard is now C++14
- Changes in the build system integration
- Some API name changes
rdkit FTBFS with libeigen3-dev 5.0.1. The full build log is available at:
https://debusine.debian.net/debian/developers-gladk-eigen3/artifact/3761129/
Here is the most probably relevant part of the failing build log:
===========================================
- -- Eigen3 version .. found in /usr/include/eigen3, but at least version
2.91.0 is required
- -- Could NOT find Eigen3 (missing: EIGEN3_VERSION_OK) (Required is at least
version "2.91.0")
CMake Error at
/usr/share/cmake-4.3/Modules/ExternalProject/shared_internal_commands.cmake:928
(message):
error: could not find git for clone of Eigen
Call Stack (most recent call first):
/usr/share/cmake-4.3/Modules/ExternalProject.cmake:3258
(_ep_add_download_command)
External/Eigen/CMakeLists.txt:4 (ExternalProject_Add)
- -- Configuring incomplete, errors occurred!
cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt
===========================================
libeigen3-dev_5.0.1-1 is available in experimental.
When this package version lands into unstable (probably at the beginning
of June 2026), this bug will be increased in severity to serious.
Thanks,
Anton
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--- Begin Message ---
Source: rdkit
Source-Version: 202603.4-2
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Format: 1.8
Date: Tue, 08 Sep 2026 05:59:04 -0400
Source: rdkit
Architecture: source
Version: 202603.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1136322 1146843
Changes:
rdkit (202603.4-2) unstable; urgency=medium
.
* Backport modified upstream commit to fix FTBFS with eigen3 >= 5.0.0
(Closes: #1136322)
* Backport upstream commit increasing test tolerance to fix test failure on
arm64 (Closes: #1146843)
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