Your message dated Sun, 13 Sep 2026 00:33:46 +0000
with message-id <[email protected]>
and subject line Bug#1046372: fixed in librcsb-core-wrapper 1.005-15
has caused the Debian Bug report #1046372,
regarding librcsb-core-wrapper: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1046372: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1046372
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: librcsb-core-wrapper
Version: 1.005-11
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package librcsb-core-wrapper
> dpkg-buildpackage: info: source version 1.005-11
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --with python3
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean
> make -j8 clean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> rm -rf docs
>
> ------------------------------------------------------------
> **** Cleaning etc ****
> ------------------------------------------------------------
>
> ------------------------------------------------------------
> **** Cleaning common ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/common'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
>
> ------------------------------------------------------------
> **** Cleaning test results in dict-obj-file ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/dict-obj-file'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/dict-obj-file'
>
> ------------------------------------------------------------
> **** Cleaning test results in pdbml-parser ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/pdbml-parser'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/common'
>
> ------------------------------------------------------------
> **** Cleaning tables ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/tables'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/pdbml-parser'
> rm -rf rcsb
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/tables'
>
> ------------------------------------------------------------
> **** Cleaning regex ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/regex'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/regex'
>
> ------------------------------------------------------------
> **** Cleaning cif-file ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-file'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-file'
>
> ------------------------------------------------------------
> **** Cleaning cif-parser ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-parser'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-parser'
>
> ------------------------------------------------------------
> **** Cleaning cif-file-util ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-file-util'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-file-util'
>
> ------------------------------------------------------------
> **** Cleaning dict-obj-file ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/dict-obj-file'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/dict-obj-file'
>
> ------------------------------------------------------------
> **** Cleaning pdbml-parser ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/pdbml-parser'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/pdbml-parser'
>
> ------------------------------------------------------------
> **** Cleaning cctbx ****
> ------------------------------------------------------------
> make[3]: Entering directory '/<<PKGBUILDDIR>>/cctbx'
> make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make
> rule.
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/cctbx'
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -rf wrapper/python/build
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building librcsb-core-wrapper using existing
> ./librcsb-core-wrapper_1.005.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: error: cannot represent change to wrapper/python/src:
> dpkg-source: error: new version is symlink to ../src
> dpkg-source: error: old version is nonexistent
> dpkg-source: warning: ignoring deletion of file
> dict-obj-file/test/mmcif_std.odb, use --include-removal to override
> dpkg-source: error: cannot represent change to
> .pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so:
> binary file contents changed
> dpkg-source: error: add
> .pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: warning: executable mode 0755 of
> '.pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so'
> will not be represented in diff
> dpkg-source: error: cannot represent change to
> cif-file-util/obj/.libs/CifCorrector.o: binary file contents changed
> dpkg-source: error: add cif-file-util/obj/.libs/CifCorrector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-file-util/obj/.libs/CifFileUtil.o: binary file contents changed
> dpkg-source: error: add cif-file-util/obj/.libs/CifFileUtil.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-file/obj/.libs/CifDataInfo.o: binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/CifDataInfo.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-file/obj/.libs/CifExcept.o: binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/CifExcept.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to cif-file/obj/.libs/CifFile.o:
> binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/CifFile.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-file/obj/.libs/CifParentChild.o: binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/CifParentChild.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to cif-file/obj/.libs/DicFile.o:
> binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/DicFile.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-file/obj/.libs/ParentChild.o: binary file contents changed
> dpkg-source: error: add cif-file/obj/.libs/ParentChild.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/CifFileReadDef.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/CifFileReadDef.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/CifParser.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/CifParser.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/CifParserBase.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/CifParserBase.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/CifScanner.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/CifScanner.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/CifScannerBase.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/CifScannerBase.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/DICParser.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/DICParser.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/DICParserBase.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/DICParserBase.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/DICScanner.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/DICScanner.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> cif-parser/obj/.libs/DICScannerBase.o: binary file contents changed
> dpkg-source: error: add cif-parser/obj/.libs/DICScannerBase.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/BlockIO.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/BlockIO.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/CifString.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/CifString.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/DataInfo.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/DataInfo.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/Exceptions.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/Exceptions.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/GenCont.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/GenCont.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/GenString.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/GenString.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/RcsbFile.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/RcsbFile.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> common/obj/.libs/RcsbPlatform.o: binary file contents changed
> dpkg-source: error: add common/obj/.libs/RcsbPlatform.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to common/obj/.libs/Serializer.o:
> binary file contents changed
> dpkg-source: error: add common/obj/.libs/Serializer.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> common/obj/.libs/mapped_ptr_vector.o: binary file contents changed
> dpkg-source: error: add common/obj/.libs/mapped_ptr_vector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> common/obj/.libs/mapped_vector.o: binary file contents changed
> dpkg-source: error: add common/obj/.libs/mapped_vector.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> dict-obj-file/obj/.libs/DictDataInfo.o: binary file contents changed
> dpkg-source: error: add dict-obj-file/obj/.libs/DictDataInfo.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> dict-obj-file/obj/.libs/DictObjCont.o: binary file contents changed
> dpkg-source: error: add dict-obj-file/obj/.libs/DictObjCont.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> dict-obj-file/obj/.libs/DictObjContInfo.o: binary file contents changed
> dpkg-source: error: add dict-obj-file/obj/.libs/DictObjContInfo.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> dict-obj-file/obj/.libs/DictObjFile.o: binary file contents changed
> dpkg-source: error: add dict-obj-file/obj/.libs/DictObjFile.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> dict-obj-file/obj/.libs/DictParentChild.o: binary file contents changed
> dpkg-source: error: add dict-obj-file/obj/.libs/DictParentChild.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> pdbml-parser/obj/.libs/PdbMlFileUtil.o: binary file contents changed
> dpkg-source: error: add pdbml-parser/obj/.libs/PdbMlFileUtil.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> pdbml-parser/obj/.libs/PdbMlParserHandler.o: binary file contents changed
> dpkg-source: error: add pdbml-parser/obj/.libs/PdbMlParserHandler.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> pdbml-parser/obj/.libs/misc_util.o: binary file contents changed
> dpkg-source: error: add pdbml-parser/obj/.libs/misc_util.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to regex/obj/.libs/regcomp.o:
> binary file contents changed
> dpkg-source: error: add regex/obj/.libs/regcomp.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to regex/obj/.libs/regerror.o:
> binary file contents changed
> dpkg-source: error: add regex/obj/.libs/regerror.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to regex/obj/.libs/regexec.o:
> binary file contents changed
> dpkg-source: error: add regex/obj/.libs/regexec.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to regex/obj/.libs/regfree.o:
> binary file contents changed
> dpkg-source: error: add regex/obj/.libs/regfree.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tables/obj/.libs/ISTable.o:
> binary file contents changed
> dpkg-source: error: add tables/obj/.libs/ISTable.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tables/obj/.libs/ITTable.o:
> binary file contents changed
> dpkg-source: error: add tables/obj/.libs/ITTable.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tables/obj/.libs/TTable.o:
> binary file contents changed
> dpkg-source: error: add tables/obj/.libs/TTable.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tables/obj/.libs/TableFile.o:
> binary file contents changed
> dpkg-source: error: add tables/obj/.libs/TableFile.o in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/librcsb-core-wrapper_1.005-11_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: librcsb-core-wrapper
Source-Version: 1.005-15
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
librcsb-core-wrapper, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated librcsb-core-wrapper
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 13 Sep 2026 01:45:00 +0200
Source: librcsb-core-wrapper
Architecture: source
Version: 1.005-15
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1046372
Changes:
librcsb-core-wrapper (1.005-15) unstable; urgency=medium
.
* Team upload.
* Really really fix clean target. Closes: #1046372.
* Drop unused lintian override.
* Tidy up of debian/patches.
* Simplify salsa-ci.yml.
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