Your message dated Mon, 14 Sep 2026 08:10:19 +0000
with message-id <[email protected]>
and subject line Bug#1147568: fixed in lsd2 1.9.9+dfsg-1
has caused the Debian Bug report #1147568,
regarding ITP: lsd2 -- least-squares method to estimate rates and dates from
phylogenies
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1147568: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1147568
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: [email protected]
Subject: ITP: lsd2 -- least-squares method to estimate rates and dates from
phylogenies
Package: wnpp
Owner: Andreas Tille <[email protected]>
Severity: wishlist
* Package name : lsd2
Version : 1.9.9
Upstream Author : Thu-Hien To
* URL : https://github.com/tothuhien/lsd2
* License : GPL-3+
Programming Lang: C
Description : least-squares method to estimate rates and dates from
phylogenies
LSD2 (Least-Squares Dating) infers substitution rates and node dates
on a fixed phylogenetic tree topology using least-squares criteria.
.
Features include:
* rooted and unrooted input trees, with or without outgroups;
* flexible tip/internal-node date constraints (fixed dates, bounds,
or intervals), including trees with only partially known dates;
* multiple substitution rates via user-defined tree partitions;
* confidence interval estimation via parametric bootstrap;
* detection and removal of outlier tips/dates.
.
LSD2 is also integrated as a library into IQ-TREE for divergence-time
estimation.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/lsd2
--- End Message ---
--- Begin Message ---
Source: lsd2
Source-Version: 1.9.9+dfsg-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
lsd2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated lsd2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 13 Sep 2026 08:34:44 +0200
Source: lsd2
Binary: lsd2 lsd2-dbgsym
Architecture: source amd64
Version: 1.9.9+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
lsd2 - least-squares method to estimate rates and dates from phylogenies
Closes: 1147568
Changes:
lsd2 (1.9.9+dfsg-1) unstable; urgency=medium
.
* Initial release (Closes: 1147568)
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