Your message dated Mon, 21 Sep 2026 12:17:02 +0000
with message-id <[email protected]>
and subject line Bug#1127186: fixed in cufflinks
2.2.1+git20190706.dc3b0cb+dfsg-1
has caused the Debian Bug report #1127186,
regarding cufflinks: libboost-system-dev package is obsolete with boost 1.89
and newer
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1127186: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1127186
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:cufflinks
Version: 2.2.1+dfsg.1-10
Severity: important
Tags: sid forky
User: [email protected]
Usertags: boost1.90
This package either build-depends on libboost-system-dev or depends on it.
The boost system library was removed upstream in 1.89, and is empty since 1.69.
If this library is referenced in the build system, the library can just be
removed from the build system, and the package should continue to build
for any boost version newer than 1.69, including boost1.83 in Debian.
There is no need to wait until boost 1.90 becomes the default, the issue
can be addressed in unstable. Issues to check:
- Remove libboost-system-dev in Depends and Build-Depends.
- Adjust autopkg tests and test dependencies if needed.
- Scan the build system if the library is used, and remove it
from the build system. https://www.boost.org/releases/1.89.0/
has a short paragraph how to do that for cmake.
boost1.90 is now available in unstable, and a boost-defaults
defaulting to 1.90 is available in experimental. Please also check
that the package builds with boost 1.90.
--- End Message ---
--- Begin Message ---
Source: cufflinks
Source-Version: 2.2.1+git20190706.dc3b0cb+dfsg-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
cufflinks, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated cufflinks package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Hash: SHA512
Format: 1.8
Date: Mon, 21 Sep 2026 13:33:58 +0200
Source: cufflinks
Architecture: source
Version: 2.2.1+git20190706.dc3b0cb+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1114084 1127186
Changes:
cufflinks (2.2.1+git20190706.dc3b0cb+dfsg-1) unstable; urgency=medium
.
* New upstream version (latest commit)
* Build with gcc-15
- Force -std=gnu11 when compiling the legacy locfit C code so that
old-style "extern f();" declarations keep their pre-C23 meaning of
"unspecified arguments" instead of "no arguments"
- gcc15.patch: fix broken function signatures (prresp, compbandwid,
wdexpand, compsda, widthsj, kdecri, ar_setfunction, extern INT fact[])
- cxxstandard.patch: force -std=gnu++17 instead of upstream's -std=c++03
(C++03 no longer works with GCC 16's libstdc++, Boost 1.90 and Eigen 5,
while the compiler default C++23 breaks the bundled LEMON library which
still uses std::allocator::construct/destroy)
- byte.patch: use uint8_t instead of the bare 'byte' type (collides with
std::byte under C++17) in gff.cpp, codons.cpp and gdna.cpp
Closes: #1114084
* d/watch:
- version=5
- Fetch latest Git commit
* Do not Build-Depend libboost-system-dev
+ d/rules: exclude boost-system
Closes: #1127186
* Build-Depends:
- libboost-filesystem-dev
- s/dh-python/dh-sequence-python3/
* Fix doc installation
* Reformat the Last-Update date as ISO YYYY-MM-DD.
* Remove redundant Priority: optional from source stanza.
* Update standards version to 4.7.4, no changes needed.
* Reflow Uploaders field (cme)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* debputy lint --auto-fix (routine-update)
* Add autopkgtest
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