Your message dated Tue, 20 Oct 2026 11:36:58 +0000
with message-id <[email protected]>
and subject line Bug#1150426: fixed in sift 6.2.1+ds-1
has caused the Debian Bug report #1150426,
regarding sift: ships prebuilt x86-64 binaries from bin/web, FTBFS on other
architectures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1150426: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1150426
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sift
Version: 6.2.1-2
Severity: important
Tags: patch ftbfs
X-Debbugs-Cc: [email protected]
User: [email protected]
Usertags: origin-ubuntu stonking ubuntu-patch
Hi,
The sift 6.2.1 upstream tarball contains a bin/web/ directory with five
prebuilt x86-64 executables:
bin/web/allowed_subst_html
bin/web/process_alignment
bin/web/seqs_to_matrixweb
bin/web/seqs_to_msf
bin/web/seqs_to_msf_web
src/Makefile doesn't build them (their sources are in src/, but they are not
in BIN), and debian/rules installs the whole bin/ tree with
"dh_install ... -Xlinux -Xsolaris bin", so these upstream binaries end up in
/usr/lib/sift/bin/web/ in the amd64 package rather than being built from
source. Nothing in the package uses them (they are web-server helpers).
Since sift is in non-free and only built on amd64 in Debian (#987606), this
goes unnoticed there, but on every other architecture the build fails in
dh_strip:
objcopy: Unable to recognise the architecture of the input file
`debian/sift/usr/lib/sift/bin/web/seqs_to_msf_web'
Ubuntu builds sift on all architectures, so we hit this; the previous
version (4.0.3b) didn't have bin/web.
The attached change excludes bin/web from the installation, which fixes the
build on other architectures and stops shipping binaries that weren't built
from source. The only change in the amd64 package is that /usr/lib/sift/bin/web/
is gone. (An alternative would be to build those tools from src/, if they are
considered useful, or to repack the tarball without them.)
Ubuntu upload: sift 6.2.1-2ubuntu1.
Thanks,
Sebastien Bacher
-- System Information:
Debian Release: forky/sid
APT prefers resolute-updates
APT policy: (500, 'resolute-updates'), (500, 'resolute-security'), (500,
'resolute'), (100, 'resolute-backports')
Architecture: amd64 (x86_64)
Kernel: Linux 7.0.0-38-generic (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- a/debian/rules
+++ b/debian/rules
@@ -61,7 +61,8 @@
override_dh_install:
# lkajan: fastaseqs comes from the blimps package, this source does not
have rules for creating it
- dh_install -X.svn -X.swp -XIntersectFeatures.jar -XManuals -Xfastaseqs
-Xlinux -Xsolaris bin $(prefix)/lib/sift/
+ # bin/web contains prebuilt x86-64 binaries, not built from source here
+ dh_install -X.svn -X.swp -XIntersectFeatures.jar -XManuals -Xfastaseqs
-Xlinux -Xsolaris -Xbin/web bin $(prefix)/lib/sift/
#dh_install bin/IntersectFeatures.jar $(pkgdatadir)/
dh_install -X.svn -X.swp blimps/docs $(prefix)/share/sift/blimps/
--- End Message ---
--- Begin Message ---
Source: sift
Source-Version: 6.2.1+ds-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
sift, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated sift package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 20 Oct 2026 12:59:20 +0200
Source: sift
Architecture: source
Version: 6.2.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 986200 1150426
Changes:
sift (6.2.1+ds-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Fix Homepage
* d/watch:
- Version 5
- Fix
* Remove all binaries from source
* Remove now unneeded lintian-overrides
* Use Debian packaged libblimps
* Use BLIMPS data from /usr/share/blimps provided by blimps-utils
* Add autopkgtest
Closes: #986200
* cme fix dpkg-control
* Cleanup docs
.
[ Sebastien Bacher ]
* Do not install prebuild binaries from bin/web
Closes: #1150426
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48f548306937547baa276e333838f683f901943e 22004 sift_6.2.1+ds-1.debian.tar.xz
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Checksums-Sha256:
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Files:
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