Source: pigx-rnaseq Version: 0.1.0-1.1 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230113 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > input: > /<<PKGBUILDDIR>>/tests/output/feature_counts/raw_counts/hisat2/counts.tsv, > /<<PKGBUILDDIR>>/tests/output/colData.tsv > output: > /<<PKGBUILDDIR>>/tests/output/report/hisat2/analysis1.deseq.report.html > log: /<<PKGBUILDDIR>>/tests/output/logs/hisat2/analysis1.report.log > jobid: 45 > reason: Missing output files: > /<<PKGBUILDDIR>>/tests/output/report/hisat2/analysis1.deseq.report.html; > Input files updated by another job: > /<<PKGBUILDDIR>>/tests/output/colData.tsv, > /<<PKGBUILDDIR>>/tests/output/feature_counts/raw_counts/hisat2/counts.tsv > wildcards: analysis=analysis1 > resources: tmpdir=/tmp, mem_mb=4000, mem_mib=3815 > > /usr/bin/Rscript --vanilla /<<PKGBUILDDIR>>/scripts/runDeseqReport.R > --logo=/<<PKGBUILDDIR>>/images/Logo_PiGx.png --prefix='analysis1' > --reportFile=/<<PKGBUILDDIR>>/scripts/deseqReport.Rmd > --countDataFile=/<<PKGBUILDDIR>>/tests/output/feature_counts/raw_counts/hisat2/counts.tsv > --colDataFile=/<<PKGBUILDDIR>>/tests/output/colData.tsv > --gtfFile=/<<PKGBUILDDIR>>/tests/sample_data/sample.gtf > --caseSampleGroups='HBR' --controlSampleGroups='UHR' --covariates='' > --workdir=/<<PKGBUILDDIR>>/tests/output/report/hisat2 --organism='' > --description='This analysis is part of the pigx-rnaseq build-time tests.' > --selfContained='True' >> > /<<PKGBUILDDIR>>/tests/output/logs/hisat2/analysis1.report.log 2>&1 > [Fri Jan 13 20:26:39 2023] > Finished job 38. > 35 of 48 steps (73%) done > [Fri Jan 13 20:26:53 2023] > Finished job 45. > 36 of 48 steps (75%) done > E: Build killed with signal TERM after 150 minutes of inactivity The full build log is available from: http://qa-logs.debian.net/2023/01/13/pigx-rnaseq_0.1.0-1.1_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230113;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230113&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
