Source: prody
Version: 2.3.1+dfsg-3
Severity: serious
Justification: FTBFS
Tags: sid ftbfs
Forwarded: https://github.com/prody/ProDy/issues/1723
Hello,
prody FTBFS with python3-biopython > 1.79:
======================================================================
FAIL: testBuildMSAlocal
(prody.tests.sequence.test_analysis.TestBuildMSA.testBuildMSAlocal)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_prody/build/prody/tests/sequence/test_analysis.py",
line 1210, in testBuildMSAlocal
assert_array_equal(expect, result)
File
"/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
985, in assert_array_equal
assert_array_compare(operator.__eq__, x, y, err_msg=err_msg,
File "/usr/lib/python3.11/contextlib.py", line 81, in inner
return func(*args, **kwds)
^^^^^^^^^^^^^^^^^^^
File
"/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
862, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Arrays are not equal
Mismatched elements: 2 / 2 (100%)
x: array([<Sequence: 1 (msa_3hsyA_3o21A[0]; length 380; 354 residues
and 26 gaps)>,
<Sequence: 2 (msa_3hsyA_3o21A[1]; length 380; 374 residues and 6
gaps)>],
dtype=object)
y: array([<Sequence: 1 (Unknown[0]; length 80; 59 residues and 21 gaps)>,
<Sequence: 2 (Unknown[1]; length 80; 64 residues and 16 gaps)>],
dtype=object)
The upstream knows about the issue.
Best,
Andrius
