Package: neobio
Version: 0.0.20030929-1
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu quantal ubuntu-patch openjdk-7-transition
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Dear Maintainer,
In Ubuntu, the attached patch was applied to achieve the following:
* Transition package to default java implementation:
- d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
to default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
Ubuntu quantal is transitioning default java from openjdk-6 to openjdk-7. This
patch eases the transition and ensures backwards compatible bytecode is built.
Note that this is not a release goal for wheezy.
Thanks for considering the patch.
- -- System Information:
Debian Release: wheezy/sid
APT prefers quantal-updates
APT policy: (500, 'quantal-updates'), (500, 'quantal-security'), (500,
'quantal')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.5.0-8-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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diff -Nru neobio-0.0.20030929/debian/changelog neobio-0.0.20030929/debian/changelog
diff -Nru neobio-0.0.20030929/debian/control neobio-0.0.20030929/debian/control
--- neobio-0.0.20030929/debian/control 2012-05-30 10:12:25.000000000 +0100
+++ neobio-0.0.20030929/debian/control 2012-08-07 14:29:00.000000000 +0100
@@ -3,7 +3,7 @@
Priority: extra
Maintainer: Debian Med Packaging Team <[email protected]>
Uploaders: Christoph Gille <[email protected]>
-Build-Depends: debhelper (>= 8), openjdk-6-jdk | sun-java6-jdk, javahelper (>=0.25)
+Build-Depends: debhelper (>= 8), default-jdk (>= 1:1.6), javahelper (>=0.25)
Standards-Version: 3.9.3
Homepage: http://neobio.sourceforge.net/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/neobio/trunk/
@@ -11,7 +11,7 @@
Package: neobio
Architecture: all
-Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, ${misc:Depends}, ${java:Depends}
+Depends: default-jre | java6-runtime, java-wrappers, ${misc:Depends}, ${java:Depends}
Suggests: strap
Enhances: strap
Description: pairwise sequence alignments
diff -Nru neobio-0.0.20030929/debian/rules neobio-0.0.20030929/debian/rules
--- neobio-0.0.20030929/debian/rules 2012-05-30 10:12:11.000000000 +0100
+++ neobio-0.0.20030929/debian/rules 2012-08-07 14:26:12.000000000 +0100
@@ -12,7 +12,7 @@
override_dh_auto_build:
mkdir -p classes
- javac -cp src -d classes $(shell find src -name "*.java")
+ javac -cp src -source 1.5 -target 1.5 -d classes $(shell find src -name "*.java")
jar -cf neobio-$(VERSION).jar -C classes neobio -C bin neobio/gui/icons
override_dh_clean:
