Package: picard-tools
Version: 1.46-1
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu quantal ubuntu-patch openjdk-7-transition
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Dear Maintainer,
In Ubuntu, the attached patch was applied to achieve the following:
* Transition package to use default java implementation:
- d/control: BD on default-jdk, switch runtime dependency to
default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
Ubuntu quantal is transitioning default java from openjdk-6 to openjdk-7. This
patch eases the transition and ensures backwards compatible bytecode is built.
Note that this is not a release goal for wheezy.
Thanks for considering the patch.
- -- System Information:
Debian Release: wheezy/sid
APT prefers quantal-updates
APT policy: (500, 'quantal-updates'), (500, 'quantal-security'), (500,
'quantal')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.5.0-8-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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diff -Nru picard-tools-1.46/debian/changelog picard-tools-1.46/debian/changelog
diff -Nru picard-tools-1.46/debian/control picard-tools-1.46/debian/control
--- picard-tools-1.46/debian/control 2011-06-03 12:49:09.000000000 +0100
+++ picard-tools-1.46/debian/control 2012-08-07 15:09:48.000000000 +0100
@@ -5,7 +5,7 @@
DM-Upload-Allowed: yes
Uploaders: Shaun Jackman <[email protected]>,
Charles Plessy <[email protected]>
-Build-Depends: ant, openjdk-6-jdk|java-compiler, testng,
+Build-Depends: ant, default-jdk, testng,
debhelper (>= 7.0.50~)
Standards-Version: 3.9.2
Homepage: http://picard.sourceforge.net/
@@ -23,7 +23,7 @@
Package: picard-tools
Architecture: all
-Depends: openjdk-6-jre|java-runtime, ${misc:Depends},
+Depends: default-jre | java6-runtime, ${misc:Depends},
libsam-java (>= ${source:Version}), ${python:Depends}
Suggests: python, r-base-core
Description: Command line tools to manipulate SAM and BAM files
diff -Nru picard-tools-1.46/debian/rules picard-tools-1.46/debian/rules
--- picard-tools-1.46/debian/rules 2011-06-03 12:00:33.000000000 +0100
+++ picard-tools-1.46/debian/rules 2012-08-07 15:06:28.000000000 +0100
@@ -5,6 +5,9 @@
%:
dh $@
+override_dh_auto_build:
+ dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5
+
override_dh_auto_configure:
[ -d lib ] || mkdir lib # This empty directory is lost in the packages's Git clone.
dh_auto_configure
