The upstream source has been updated again to v2.1.1 (as of 2013-Apr-11), which is a minor bugfix release from v2.1.0. The 2.1.x release is a substantial improvement over previous releases according to the cufflinks page:
http://cufflinks.cbcb.umd.edu/ I don't see any easily accessible source repository, but here's the source code link from that page: http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.1.1.tar.gz Previous versions are downloadable from the directory, but there is no -latest symlink: http://cufflinks.cbcb.umd.edu/downloads/ I get an error when trying to compile 2.1.1 from source on Debian at the configure stage: checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation. autoreconf suggests there is probably other modernisation work to do as well (which is beyond my current abilities unfortunately -- I'm not familiar with the autotools): configure.ac:38: the top level configure.ac:39: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2590: _AC_COMPILE_IFELSE is expanded from... ../../lib/autoconf/general.m4:2606: AC_COMPILE_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... ax_boost_thread.m4:33: AX_BOOST_THREAD is expanded from... configure.ac:39: the top level configure.ac:34: required file `build-aux/ar-lib' not found configure.ac:34: `automake --add-missing' can install `ar-lib' autoreconf: automake failed with exit status: 1 - David Eccles (gringer) -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
