Source: python-csb Version: 1.1.1+dfsg-1 Severity: serious Tags: jessie sid User: [email protected] Usertags: qa-ftbfs-20130620 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > make[1]: Entering directory `/«BUILDDIR»/python-csb-1.1.1+dfsg' > set -e; \ > for py in python2.7 python3.2 python3.3; do \ > $py -B setup.py build; \ > done > running build > running build_py > creating build > creating build/lib.linux-x86_64-2.7 > creating build/lib.linux-x86_64-2.7/csb > copying csb/build.py -> build/lib.linux-x86_64-2.7/csb > copying csb/__init__.py -> build/lib.linux-x86_64-2.7/csb > creating build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/embd.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/__init__.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/promix.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/hhsearch.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/precision.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/buildhmm.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/helloworld.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/bfit.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/hhfrag.py -> build/lib.linux-x86_64-2.7/csb/apps > copying csb/apps/bfite.py -> build/lib.linux-x86_64-2.7/csb/apps > creating build/lib.linux-x86_64-2.7/csb/numeric > copying csb/numeric/__init__.py -> build/lib.linux-x86_64-2.7/csb/numeric > copying csb/numeric/integrators.py -> build/lib.linux-x86_64-2.7/csb/numeric > creating build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/__init__.py -> > build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/mixtures.py -> > build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/maxent.py -> build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/ars.py -> build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/scalemixture.py -> > build/lib.linux-x86_64-2.7/csb/statistics > copying csb/statistics/rand.py -> build/lib.linux-x86_64-2.7/csb/statistics > creating build/lib.linux-x86_64-2.7/csb/statistics/pdf > copying csb/statistics/pdf/__init__.py -> > build/lib.linux-x86_64-2.7/csb/statistics/pdf > creating build/lib.linux-x86_64-2.7/csb/statistics/samplers > copying csb/statistics/samplers/__init__.py -> > build/lib.linux-x86_64-2.7/csb/statistics/samplers > creating build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/__init__.py -> > build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/multichain.py -> > build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/propagators.py -> > build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/singlechain.py -> > build/lib.linux-x86_64-2.7/csb/statistics/samplers/mc > creating build/lib.linux-x86_64-2.7/csb/core > copying csb/core/__init__.py -> build/lib.linux-x86_64-2.7/csb/core > creating build/lib.linux-x86_64-2.7/csb/test > copying csb/test/__init__.py -> build/lib.linux-x86_64-2.7/csb/test > copying csb/test/app.py -> build/lib.linux-x86_64-2.7/csb/test > creating build/lib.linux-x86_64-2.7/csb/test/cases > copying csb/test/cases/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases > creating build/lib.linux-x86_64-2.7/csb/test/cases/numeric > copying csb/test/cases/numeric/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/numeric > copying csb/test/cases/numeric/integrators.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/numeric > creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/mixtures.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/maxent.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/ars.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/scalemixture.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > copying csb/test/cases/statistics/rand.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics > creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics/pdf > copying csb/test/cases/statistics/pdf/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics/pdf > creating build/lib.linux-x86_64-2.7/csb/test/cases/statistics/samplers > copying csb/test/cases/statistics/samplers/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statistics/samplers > creating build/lib.linux-x86_64-2.7/csb/test/cases/core > copying csb/test/cases/core/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/core > creating build/lib.linux-x86_64-2.7/csb/test/cases/io > copying csb/test/cases/io/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/io > creating build/lib.linux-x86_64-2.7/csb/test/cases/statmech > copying csb/test/cases/statmech/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statmech > copying csb/test/cases/statmech/wham.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statmech > copying csb/test/cases/statmech/ensembles.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/statmech > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio > copying csb/test/cases/bio/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/structure > copying csb/test/cases/bio/structure/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/structure > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/nmr > copying csb/test/cases/bio/nmr/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/nmr > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/hmm > copying csb/test/cases/bio/hmm/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/hmm > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/fragments > copying csb/test/cases/bio/fragments/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/fragments > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io > copying csb/test/cases/bio/io/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/fasta > copying csb/test/cases/bio/io/fasta/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/fasta > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/clans > copying csb/test/cases/bio/io/clans/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/clans > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/whatif > copying csb/test/cases/bio/io/whatif/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/whatif > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/isites > copying csb/test/cases/bio/io/isites/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/isites > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/wwpdb > copying csb/test/cases/bio/io/wwpdb/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/wwpdb > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/hhpred > copying csb/test/cases/bio/io/hhpred/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/hhpred > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/mrc > copying csb/test/cases/bio/io/mrc/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/mrc > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/procheck > copying csb/test/cases/bio/io/procheck/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/io/procheck > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/sequence > copying csb/test/cases/bio/sequence/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/sequence > creating build/lib.linux-x86_64-2.7/csb/test/cases/bio/utils > copying csb/test/cases/bio/utils/__init__.py -> > build/lib.linux-x86_64-2.7/csb/test/cases/bio/utils > creating build/lib.linux-x86_64-2.7/csb/io > copying csb/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/io > copying csb/io/tsv.py -> build/lib.linux-x86_64-2.7/csb/io > copying csb/io/plots.py -> build/lib.linux-x86_64-2.7/csb/io > creating build/lib.linux-x86_64-2.7/csb/statmech > copying csb/statmech/__init__.py -> build/lib.linux-x86_64-2.7/csb/statmech > copying csb/statmech/wham.py -> build/lib.linux-x86_64-2.7/csb/statmech > copying csb/statmech/ensembles.py -> build/lib.linux-x86_64-2.7/csb/statmech > creating build/lib.linux-x86_64-2.7/csb/bio > copying csb/bio/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio > creating build/lib.linux-x86_64-2.7/csb/bio/structure > copying csb/bio/structure/__init__.py -> > build/lib.linux-x86_64-2.7/csb/bio/structure > creating build/lib.linux-x86_64-2.7/csb/bio/nmr > copying csb/bio/nmr/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/nmr > creating build/lib.linux-x86_64-2.7/csb/bio/hmm > copying csb/bio/hmm/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/hmm > copying csb/bio/hmm/pseudocounts.py -> build/lib.linux-x86_64-2.7/csb/bio/hmm > creating build/lib.linux-x86_64-2.7/csb/bio/fragments > copying csb/bio/fragments/__init__.py -> > build/lib.linux-x86_64-2.7/csb/bio/fragments > copying csb/bio/fragments/rosetta.py -> > build/lib.linux-x86_64-2.7/csb/bio/fragments > copying csb/bio/fragments/isites.py -> > build/lib.linux-x86_64-2.7/csb/bio/fragments > copying csb/bio/fragments/hhsites.py -> > build/lib.linux-x86_64-2.7/csb/bio/fragments > creating build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/fasta.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/svg.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/clans.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/psipred.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/wwpdb.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/mrc.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/hhpred.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/procheck.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/dssp.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/vasco.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/isites.py -> build/lib.linux-x86_64-2.7/csb/bio/io > copying csb/bio/io/whatif.py -> build/lib.linux-x86_64-2.7/csb/bio/io > creating build/lib.linux-x86_64-2.7/csb/bio/sequence > copying csb/bio/sequence/__init__.py -> > build/lib.linux-x86_64-2.7/csb/bio/sequence > creating build/lib.linux-x86_64-2.7/csb/bio/utils > copying csb/bio/utils/__init__.py -> build/lib.linux-x86_64-2.7/csb/bio/utils > creating build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/1C3W_10.mrc -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/csb.tsv -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/2JZC.sum -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1ea0a1.hhr -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/1nz9A.frags -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1nz0a_.mfasta -> > build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/ISL5.1.isl -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/1d3z.regular.pdb -> > build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/3p1u.pdb -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/pdbout.txt -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/standard.tsv -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/1d3z.legacy.pdb -> > build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1nz0a_.a3m -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/struct.ali.mfasta -> > build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/out.clans -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/1nz9.pdb -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/test.fa -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1nz0a_.hhm -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1nz0a_.pdb -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/test.hhm -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/3shm_ca.pdb -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/d1b24a2.hhm -> build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/ake-xray-ensemble-ca.pdb -> > build/lib.linux-x86_64-2.7/csb/test/data > copying csb/test/data/test2.hhm -> build/lib.linux-x86_64-2.7/csb/test/data > creating build/lib.linux-x86_64-2.7/csb/bio/nmr/resources > copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> > build/lib.linux-x86_64-2.7/csb/bio/nmr/resources > copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> > build/lib.linux-x86_64-2.7/csb/bio/nmr/resources > warning: build_py: byte-compiling is disabled, skipping. > > running build > running build_py > creating build/lib > creating build/lib/csb > copying csb/build.py -> build/lib/csb > copying csb/__init__.py -> build/lib/csb > creating build/lib/csb/apps > copying csb/apps/embd.py -> build/lib/csb/apps > copying csb/apps/__init__.py -> build/lib/csb/apps > copying csb/apps/promix.py -> build/lib/csb/apps > copying csb/apps/hhsearch.py -> build/lib/csb/apps > copying csb/apps/precision.py -> build/lib/csb/apps > copying csb/apps/buildhmm.py -> build/lib/csb/apps > copying csb/apps/helloworld.py -> build/lib/csb/apps > copying csb/apps/bfit.py -> build/lib/csb/apps > copying csb/apps/hhfrag.py -> build/lib/csb/apps > copying csb/apps/bfite.py -> build/lib/csb/apps > creating build/lib/csb/numeric > copying csb/numeric/__init__.py -> build/lib/csb/numeric > copying csb/numeric/integrators.py -> build/lib/csb/numeric > creating build/lib/csb/statistics > copying csb/statistics/__init__.py -> build/lib/csb/statistics > copying csb/statistics/mixtures.py -> build/lib/csb/statistics > copying csb/statistics/maxent.py -> build/lib/csb/statistics > copying csb/statistics/ars.py -> build/lib/csb/statistics > copying csb/statistics/scalemixture.py -> build/lib/csb/statistics > copying csb/statistics/rand.py -> build/lib/csb/statistics > creating build/lib/csb/statistics/pdf > copying csb/statistics/pdf/__init__.py -> build/lib/csb/statistics/pdf > creating build/lib/csb/statistics/samplers > copying csb/statistics/samplers/__init__.py -> > build/lib/csb/statistics/samplers > creating build/lib/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/__init__.py -> > build/lib/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/multichain.py -> > build/lib/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/propagators.py -> > build/lib/csb/statistics/samplers/mc > copying csb/statistics/samplers/mc/singlechain.py -> > build/lib/csb/statistics/samplers/mc > creating build/lib/csb/core > copying csb/core/__init__.py -> build/lib/csb/core > creating build/lib/csb/test > copying csb/test/__init__.py -> build/lib/csb/test > copying csb/test/app.py -> build/lib/csb/test > creating build/lib/csb/test/cases > copying csb/test/cases/__init__.py -> build/lib/csb/test/cases > creating build/lib/csb/test/cases/numeric > copying csb/test/cases/numeric/__init__.py -> build/lib/csb/test/cases/numeric > copying csb/test/cases/numeric/integrators.py -> > build/lib/csb/test/cases/numeric > creating build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/__init__.py -> > build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/mixtures.py -> > build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/maxent.py -> > build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/ars.py -> > build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/scalemixture.py -> > build/lib/csb/test/cases/statistics > copying csb/test/cases/statistics/rand.py -> > build/lib/csb/test/cases/statistics > creating build/lib/csb/test/cases/statistics/pdf > copying csb/test/cases/statistics/pdf/__init__.py -> > build/lib/csb/test/cases/statistics/pdf > creating build/lib/csb/test/cases/statistics/samplers > copying csb/test/cases/statistics/samplers/__init__.py -> > build/lib/csb/test/cases/statistics/samplers > creating build/lib/csb/test/cases/core > copying csb/test/cases/core/__init__.py -> build/lib/csb/test/cases/core > creating build/lib/csb/test/cases/io > copying csb/test/cases/io/__init__.py -> build/lib/csb/test/cases/io > creating build/lib/csb/test/cases/statmech > copying csb/test/cases/statmech/__init__.py -> > build/lib/csb/test/cases/statmech > copying csb/test/cases/statmech/wham.py -> build/lib/csb/test/cases/statmech > copying csb/test/cases/statmech/ensembles.py -> > build/lib/csb/test/cases/statmech > creating build/lib/csb/test/cases/bio > copying csb/test/cases/bio/__init__.py -> build/lib/csb/test/cases/bio > creating build/lib/csb/test/cases/bio/structure > copying csb/test/cases/bio/structure/__init__.py -> > build/lib/csb/test/cases/bio/structure > creating build/lib/csb/test/cases/bio/nmr > copying csb/test/cases/bio/nmr/__init__.py -> build/lib/csb/test/cases/bio/nmr > creating build/lib/csb/test/cases/bio/hmm > copying csb/test/cases/bio/hmm/__init__.py -> build/lib/csb/test/cases/bio/hmm > creating build/lib/csb/test/cases/bio/fragments > copying csb/test/cases/bio/fragments/__init__.py -> > build/lib/csb/test/cases/bio/fragments > creating build/lib/csb/test/cases/bio/io > copying csb/test/cases/bio/io/__init__.py -> build/lib/csb/test/cases/bio/io > creating build/lib/csb/test/cases/bio/io/fasta > copying csb/test/cases/bio/io/fasta/__init__.py -> > build/lib/csb/test/cases/bio/io/fasta > creating build/lib/csb/test/cases/bio/io/clans > copying csb/test/cases/bio/io/clans/__init__.py -> > build/lib/csb/test/cases/bio/io/clans > creating build/lib/csb/test/cases/bio/io/whatif > copying csb/test/cases/bio/io/whatif/__init__.py -> > build/lib/csb/test/cases/bio/io/whatif > creating build/lib/csb/test/cases/bio/io/isites > copying csb/test/cases/bio/io/isites/__init__.py -> > build/lib/csb/test/cases/bio/io/isites > creating build/lib/csb/test/cases/bio/io/wwpdb > copying csb/test/cases/bio/io/wwpdb/__init__.py -> > build/lib/csb/test/cases/bio/io/wwpdb > creating build/lib/csb/test/cases/bio/io/hhpred > copying csb/test/cases/bio/io/hhpred/__init__.py -> > build/lib/csb/test/cases/bio/io/hhpred > creating build/lib/csb/test/cases/bio/io/mrc > copying csb/test/cases/bio/io/mrc/__init__.py -> > build/lib/csb/test/cases/bio/io/mrc > creating build/lib/csb/test/cases/bio/io/procheck > copying csb/test/cases/bio/io/procheck/__init__.py -> > build/lib/csb/test/cases/bio/io/procheck > creating build/lib/csb/test/cases/bio/sequence > copying csb/test/cases/bio/sequence/__init__.py -> > build/lib/csb/test/cases/bio/sequence > creating build/lib/csb/test/cases/bio/utils > copying csb/test/cases/bio/utils/__init__.py -> > build/lib/csb/test/cases/bio/utils > creating build/lib/csb/io > copying csb/io/__init__.py -> build/lib/csb/io > copying csb/io/tsv.py -> build/lib/csb/io > copying csb/io/plots.py -> build/lib/csb/io > creating build/lib/csb/statmech > copying csb/statmech/__init__.py -> build/lib/csb/statmech > copying csb/statmech/wham.py -> build/lib/csb/statmech > copying csb/statmech/ensembles.py -> build/lib/csb/statmech > creating build/lib/csb/bio > copying csb/bio/__init__.py -> build/lib/csb/bio > creating build/lib/csb/bio/structure > copying csb/bio/structure/__init__.py -> build/lib/csb/bio/structure > creating build/lib/csb/bio/nmr > copying csb/bio/nmr/__init__.py -> build/lib/csb/bio/nmr > creating build/lib/csb/bio/hmm > copying csb/bio/hmm/__init__.py -> build/lib/csb/bio/hmm > copying csb/bio/hmm/pseudocounts.py -> build/lib/csb/bio/hmm > creating build/lib/csb/bio/fragments > copying csb/bio/fragments/__init__.py -> build/lib/csb/bio/fragments > copying csb/bio/fragments/rosetta.py -> build/lib/csb/bio/fragments > copying csb/bio/fragments/isites.py -> build/lib/csb/bio/fragments > copying csb/bio/fragments/hhsites.py -> build/lib/csb/bio/fragments > creating build/lib/csb/bio/io > copying csb/bio/io/fasta.py -> build/lib/csb/bio/io > copying csb/bio/io/svg.py -> build/lib/csb/bio/io > copying csb/bio/io/__init__.py -> build/lib/csb/bio/io > copying csb/bio/io/clans.py -> build/lib/csb/bio/io > copying csb/bio/io/psipred.py -> build/lib/csb/bio/io > copying csb/bio/io/wwpdb.py -> build/lib/csb/bio/io > copying csb/bio/io/mrc.py -> build/lib/csb/bio/io > copying csb/bio/io/hhpred.py -> build/lib/csb/bio/io > copying csb/bio/io/procheck.py -> build/lib/csb/bio/io > copying csb/bio/io/dssp.py -> build/lib/csb/bio/io > copying csb/bio/io/vasco.py -> build/lib/csb/bio/io > copying csb/bio/io/isites.py -> build/lib/csb/bio/io > copying csb/bio/io/whatif.py -> build/lib/csb/bio/io > creating build/lib/csb/bio/sequence > copying csb/bio/sequence/__init__.py -> build/lib/csb/bio/sequence > creating build/lib/csb/bio/utils > copying csb/bio/utils/__init__.py -> build/lib/csb/bio/utils > creating build/lib/csb/test/data > copying csb/test/data/1C3W_10.mrc -> build/lib/csb/test/data > copying csb/test/data/csb.tsv -> build/lib/csb/test/data > copying csb/test/data/2JZC.sum -> build/lib/csb/test/data > copying csb/test/data/d1ea0a1.hhr -> build/lib/csb/test/data > copying csb/test/data/1nz9A.frags -> build/lib/csb/test/data > copying csb/test/data/d1nz0a_.mfasta -> build/lib/csb/test/data > copying csb/test/data/ISL5.1.isl -> build/lib/csb/test/data > copying csb/test/data/1d3z.regular.pdb -> build/lib/csb/test/data > copying csb/test/data/3p1u.pdb -> build/lib/csb/test/data > copying csb/test/data/pdbout.txt -> build/lib/csb/test/data > copying csb/test/data/standard.tsv -> build/lib/csb/test/data > copying csb/test/data/1d3z.legacy.pdb -> build/lib/csb/test/data > copying csb/test/data/d1nz0a_.a3m -> build/lib/csb/test/data > copying csb/test/data/struct.ali.mfasta -> build/lib/csb/test/data > copying csb/test/data/out.clans -> build/lib/csb/test/data > copying csb/test/data/1nz9.pdb -> build/lib/csb/test/data > copying csb/test/data/test.fa -> build/lib/csb/test/data > copying csb/test/data/d1nz0a_.hhm -> build/lib/csb/test/data > copying csb/test/data/d1nz0a_.pdb -> build/lib/csb/test/data > copying csb/test/data/test.hhm -> build/lib/csb/test/data > copying csb/test/data/3shm_ca.pdb -> build/lib/csb/test/data > copying csb/test/data/d1b24a2.hhm -> build/lib/csb/test/data > copying csb/test/data/ake-xray-ensemble-ca.pdb -> build/lib/csb/test/data > copying csb/test/data/test2.hhm -> build/lib/csb/test/data > creating build/lib/csb/bio/nmr/resources > copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> > build/lib/csb/bio/nmr/resources > copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> > build/lib/csb/bio/nmr/resources > warning: build_py: byte-compiling is disabled, skipping. > > running build > running build_py > warning: build_py: byte-compiling is disabled, skipping. > > mkdir -p /«BUILDDIR»/python-csb-1.1.1+dfsg/docs/api > epydoc --html -o /«BUILDDIR»/python-csb-1.1.1+dfsg/docs/api --name CSB > --no-private --introspect-only --exclude csb.test.cases --fail-on-error > --fail-on-warning --fail-on-docstring-warning > /«BUILDDIR»/python-csb-1.1.1+dfsg/csb > [......... > +--------------------------------------------------------------------- > | In /«BUILDDIR»/python-csb-1.1.1+dfsg/csb/io/plots.py: > | No documentation available! > | Error: Import failed: > | RuntimeError: Failed to create /sbuild-nonexistent/ > | .matplotlib; consider setting MPLCONFIGDIR to a writable > | directory for matplotlib configuration data (line 53) > | > [.......... > +--------------------------------------------------------------------- > | In /«BUILDDIR»/python-csb-1.1.1+dfsg/csb/apps/ > | precision.py: > | No documentation available! > | Error: Import failed: > | RuntimeError: Failed to create /sbuild-nonexistent/ > | .matplotlib; consider setting MPLCONFIGDIR to a writable > | directory for matplotlib configuration data (line 8) > | > [.........................................................................] > Warning: 1 markup error was found while processing docstrings. Use > the verbose switch (-v) to display markup errors. > make[1]: *** [override_dh_auto_build] Error 2 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2013/06/20/python-csb_1.1.1+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
