Note that the parent package (rEFIt) is no longer maintained. I've forked rEFIt into rEFInd (http://www.rodsbooks.com/refind) and I've updated the gptsync program in rEFInd in such a way that this problem is fixed; however, at present, gptsync compiles only into an EFI binary. Patches to support compiling it as a Linux binary are welcome.

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