Hi Andreas, > I have updated the packaging at > > > svn://svn.debian.org/svn/debian-med/trunk/packages/python-biom-format/trunk/ > > and have the following questions (specifically also to Tim): > > 1. Did you forwarded this patch to upstream? > > > http://anonscm.debian.org/viewvc/debian-med/trunk/packages/python-biom-format/trunk/debian/patches/smart_arse_fix.patch?view=markup > > I think upstream would be interested in incorporating it.
No, I didn't send it. Wasn't sure how they would take it. > 2. Tim, your latest changelog says: "Rename add_metadata to something > less generic. It will die in the next release anyway." Since the > script did not died in 1.3.1 I wonder what "next release you might > mean. Don't take my word for it. Run the script! --- $ add_biom_metadata This script no longer exists. ... --- If the script denies its own existence who are we to argue? > 3. Will the packaging which I prepared in SVN work together with the > latest qiime package? This question is probably important before > I'll upload it to unstable. A quick build on my system failed. Or rather it builds but when I run it: --- % biom usage: biom <command> [<args>] The currently available commands are: The following commands could not be loaded: add-metadata Error: cannot import name make_command_in_collection_lookup_f convert Error: cannot import name make_command_in_collection_lookup_f show-install-info Error: cannot import name make_command_out_collection_lookup_f subset-table Error: cannot import name make_command_in_collection_lookup_f summarize-table Error: cannot import name make_command_in_collection_lookup_f validate-table Error: cannot import name make_command_in_collection_lookup_f See 'biom help <command>' for more information on a specific command. --- My guess is that updating PyQi might help (https://pypi.python.org/pypi/pyqi/). Did you already do that? Also, can this now be arch=all or is there still something being compiled that I missed? Cheers, TIM -- Tim Booth <tbo...@ceh.ac.uk> NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh Gifford Wallingford, England OX10 8BB http://nebc.nerc.ac.uk +44 1491 69 2705 -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
