Source: r-bioc-rsamtools Version: 1.14.2-1 Severity: serious Tags: jessie sid User: [email protected] Usertags: qa-ftbfs-20140628 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG > -I"/usr/lib/R/site-library/IRanges/include" > -I"/usr/lib/R/site-library/XVector/include" > -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -D_USE_KNETFILE > -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -Dfprintf=_samtools_fprintf > -Dexit=_samtools_exit -Dabort=_samtools_abort -I./samtools > -I./samtools/bcftools -I./tabix -fpic -g -O2 -fstack-protector > --param=ssp-buffer-size=4 -Wformat -Werror=format-security > -D_FORTIFY_SOURCE=2 -g -c utilities.c -o utilities.o > utilities.c: In function '_as_XStringSet': > utilities.c:99:5: error: unknown type name 'cachedXVectorList' > cachedXVectorList cache; > ^ > utilities.c:100:5: error: unknown type name 'cachedCharSeq' > cachedCharSeq dest; > ^ > utilities.c:101:5: warning: implicit declaration of function > 'cache_XVectorList' [-Wimplicit-function-declaration] > cache = cache_XVectorList(ans); > ^ > utilities.c:104:9: warning: implicit declaration of function > 'get_cachedXRawList_elt' [-Wimplicit-function-declaration] > dest = get_cachedXRawList_elt(&cache, i); > ^ > utilities.c:105:46: error: request for member 'length' in something not a > structure or union > Ocopy_bytes_to_i1i2_with_lkup(0, dest.length - 1, (char *) dest.seq, > ^ > utilities.c:105:72: error: request for member 'seq' in something not a > structure or union > Ocopy_bytes_to_i1i2_with_lkup(0, dest.length - 1, (char *) dest.seq, > ^ > utilities.c:106:43: error: request for member 'length' in something not a > structure or union > dest.length, seq, strlen(seq), lkup0, > ^ > make[1]: *** [utilities.o] Error 1 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/06/28/r-bioc-rsamtools_1.14.2-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
