...Just to report I'm not "just" sitting on this bug report; it does not affect all Drupal modules (although I'm sure you stumbled on a pretty common one!). The problem is not AFAICT on the tables parsing (that one already bit us some time ago) but on some other artifact. I spent some time poking the sources to understand this and did minor improvements, but wasn't able to pinpoint and fix the problem.
I've been quite busy in the last few weeks, but I hope/expect to be able to dig into this soon.
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