Package: disulfinder Version: 1.2.11-5 Severity: important User: [email protected] Usertags: ftbfs-gcc-6 gcc-6-no-match
This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. Note that only the first error is reported; there might be more. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. You may be able to find out more about this issue at https://gcc.gnu.org/gcc-6/changes.html > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat > -Werror=format-security -DDEFAULT_PKGDATADIR=\"/usr/share/disulfinder\" -O3 > -Wall -Wno-deprecated -IBRNN/RNNs -c Input/Protein.cpp -o Input/Protein.o > In file included from Input/Protein.cpp:11:0: > Input/../Common/Util.h: In function 'void Util::readfile(std::vector<T>&, > std::__cxx11::string)': > Input/../Common/Util.h:120:80: error: no matching function for call to > 'Exception::Assert(std::ifstream&, const char [34], const char*)' > Exception::Assert(ifs,"Cannot open file <%s> for reading", > filename.c_str()); > > ^ > > In file included from Input/../Common/Util.h:11:0, > from Input/Protein.cpp:11: > Input/../Common/../Common/Exception.h:30:15: note: candidate: static void > Exception::Assert(bool) > static void Assert(bool condition) { if(!condition) throw new Exception(); > } > ^~~~~~ > > Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1 > argument, 3 provided > Input/../Common/../Common/Exception.h:31:15: note: candidate: static void > Exception::Assert(bool, const char*, ...) > static void Assert(bool condition, const char *const format,...); > ^~~~~~ > > Input/../Common/../Common/Exception.h:31:15: note: no known conversion for > argument 1 from 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' > Input/../Common/../Common/Exception.h:32:15: note: candidate: static void > Exception::Assert(bool, const string&) > static void Assert(bool condition, const string &mex) { if(!condition) > throw new Exception(mex); } > ^~~~~~ > > Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2 > arguments, 3 provided > In file included from Input/Protein.cpp:11:0: > Input/../Common/Util.h: In function 'std::ostream& > Util::writeOptionArray(std::ostream&, const char*, ValueType*, int)': > Input/../Common/Util.h:169:72: error: no matching function for call to > 'Exception::Assert(std::basic_ostream<char>&, const char [25], const char*&)' > Exception::Assert(os << tag << " ", "Error while writing <%s>", tag); > ^ > > In file included from Input/../Common/Util.h:11:0, > from Input/Protein.cpp:11: > Input/../Common/../Common/Exception.h:30:15: note: candidate: static void > Exception::Assert(bool) > static void Assert(bool condition) { if(!condition) throw new Exception(); > } > ^~~~~~ > > Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1 > argument, 3 provided > Input/../Common/../Common/Exception.h:31:15: note: candidate: static void > Exception::Assert(bool, const char*, ...) > static void Assert(bool condition, const char *const format,...); > ^~~~~~ > > Input/../Common/../Common/Exception.h:31:15: note: no known conversion for > argument 1 from 'std::basic_ostream<char>' to 'bool' > Input/../Common/../Common/Exception.h:32:15: note: candidate: static void > Exception::Assert(bool, const string&) > static void Assert(bool condition, const string &mex) { if(!condition) > throw new Exception(mex); } > ^~~~~~ > > Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2 > arguments, 3 provided > In file included from Input/Protein.cpp:11:0: > Input/../Common/Util.h:172:66: error: no matching function for call to > 'Exception::Assert(std::basic_ostream<char>::__ostream_type&, const char > [25], const char*&)' > Exception::Assert(os << endl, "Error while writing <%s>", tag); > ^ > > In file included from Input/../Common/Util.h:11:0, > from Input/Protein.cpp:11: > Input/../Common/../Common/Exception.h:30:15: note: candidate: static void > Exception::Assert(bool) > static void Assert(bool condition) { if(!condition) throw new Exception(); > } > ^~~~~~ > > Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1 > argument, 3 provided > Input/../Common/../Common/Exception.h:31:15: note: candidate: static void > Exception::Assert(bool, const char*, ...) > static void Assert(bool condition, const char *const format,...); > ^~~~~~ > > Input/../Common/../Common/Exception.h:31:15: note: no known conversion for > argument 1 from 'std::basic_ostream<char>::__ostream_type {aka > std::basic_ostream<char>}' to 'bool' > Input/../Common/../Common/Exception.h:32:15: note: candidate: static void > Exception::Assert(bool, const string&) > static void Assert(bool condition, const string &mex) { if(!condition) > throw new Exception(mex); } > ^~~~~~ > > Input/../Common/../Common/Exception.h:32:15: note: candidate expects 2 > arguments, 3 provided > Input/Protein.cpp: In member function 'void Protein::ReadDSSP(std::istream&, > char, bool)': > Input/Protein.cpp:643:76: error: no matching function for call to > 'Exception::Assert(std::istream&, const char [48])' > Exception::Assert(fp,"unexpected EOF while looking for protein\'s data"); > ^ > > In file included from Input/../Common/Util.h:11:0, > from Input/Protein.cpp:11: > Input/../Common/../Common/Exception.h:30:15: note: candidate: static void > Exception::Assert(bool) > static void Assert(bool condition) { if(!condition) throw new Exception(); > } > ^~~~~~ > > Input/../Common/../Common/Exception.h:30:15: note: candidate expects 1 > argument, 2 provided > Input/../Common/../Common/Exception.h:31:15: note: candidate: static void > Exception::Assert(bool, const char*, ...) > static void Assert(bool condition, const char *const format,...); > ^~~~~~ > > Input/../Common/../Common/Exception.h:31:15: note: no known conversion for > argument 1 from 'std::istream {aka std::basic_istream<char>}' to 'bool' > Input/../Common/../Common/Exception.h:32:15: note: candidate: static void > Exception::Assert(bool, const string&) > static void Assert(bool condition, const string &mex) { if(!condition) > throw new Exception(mex); } > ^~~~~~ > > Input/../Common/../Common/Exception.h:32:15: note: no known conversion for > argument 1 from 'std::istream {aka std::basic_istream<char>}' to 'bool' > Makefile:48: recipe for target 'Input/Protein.o' failed -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
