Upstream address bounced - so this is something for the C++ programmers in the Debian Med team ... patches welcome.
Andreas. On Wed, Jan 20, 2016 at 10:42:25AM +0100, Andreas Tille wrote: > Hi Kris, > > I'm not sure whether you are aware that murasaki is packaged for Debian > by the Debian Med team. Over time we collected a set of patches you > might be interested in: > > > https://anonscm.debian.org/viewvc/debian-med/trunk/packages/murasaki/trunk/debian/patches/ > > We have not yet developed a patch for the build issue with gcc 6 you can > read below. Feel free to contact us about the problem via the bug > report e-mail if you have any questions. > > Kind regards and thanks for providing murasaki as Free Software > > Andreas. > > On Tue, Jan 19, 2016 at 06:16:57PM -0800, Martin Michlmayr wrote: > > Package: murasaki > > Version: 1.68.6-4 > > Severity: important > > User: [email protected] > > Usertags: ftbfs-gcc-6 gcc-6-no-match > > > > This package fails to build with GCC 6. GCC 6 has not been released > > yet, but it's expected that GCC 6 will become the default compiler for > > stretch. > > > > Note that only the first error is reported; there might be more. You > > can find a snapshot of GCC 6 in experimental. To build with GCC 6, > > you can set CC=gcc-6 CXX=g++-6 explicitly. > > > > You may be able to find out more about this issue at > > https://gcc.gnu.org/gcc-6/changes.html > > > > > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux > > ... > > > mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g > > > -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV > > > -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc > > > In file included from /usr/lib/openmpi/include/mpi.h:253:0, > > > from murasaki_mpi.h:33, > > > from shmvector.hh:30, > > > from sequence.h:44, > > > from murasaki.h:24, > > > from dinkymath.cc:27: > > > /usr/lib/openmpi/include/mpi_portable_platform.h:374:34: warning: invalid > > > suffix on literal; C++11 requires a space between literal and string > > > macro [-Wliteral-suffix] > > > > > > _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__) > > > ^ > > > > > > /usr/lib/openmpi/include/mpi_portable_platform.h:374:63: warning: invalid > > > suffix on literal; C++11 requires a space between literal and string > > > macro [-Wliteral-suffix] > > > > > > _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__) > > > ^ > > > > > > dinkymath.cc: In function 'std::__cxx11::string littleEndianStr(unsigned > > > int, int)': > > > dinkymath.cc:40:7: warning: variable 'last' set but not used > > > [-Wunused-but-set-variable] > > > int last=0; > > > ^~~~ > > > > > > dinkymath.cc: In function 'std::__cxx11::string littleEndianPat(unsigned > > > int, int)': > > > dinkymath.cc:53:7: warning: variable 'last' set but not used > > > [-Wunused-but-set-variable] > > > int last=0; > > > ^~~~ > > > > > > mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g > > > -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV > > > -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc > > > In file included from /usr/lib/openmpi/include/mpi.h:253:0, > > > from murasaki_mpi.h:33, > > > from shmvector.hh:30, > > > from sequence.h:44, > > > from murasaki.h:24, > > > from sequence.cc:28: > > > /usr/lib/openmpi/include/mpi_portable_platform.h:374:34: warning: invalid > > > suffix on literal; C++11 requires a space between literal and string > > > macro [-Wliteral-suffix] > > > > > > _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__) > > > ^ > > > > > > /usr/lib/openmpi/include/mpi_portable_platform.h:374:63: warning: invalid > > > suffix on literal; C++11 requires a space between literal and string > > > macro [-Wliteral-suffix] > > > > > > _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__) > > > ^ > > > > > > sequence.cc: In destructor 'Sequence::~Sequence()': > > > sequence.cc:377:123: warning: throw will always call terminate() > > > [-Wterminate] > > > throw MurasakiException("Couldn't mark System V IPC shared memory > > > region for deletion for sequence "+name+strerror(errno)); > > > > > > ^ > > > > > > sequence.cc:377:123: note: in C++11 destructors default to noexcept > > > sequence.cc: In destructor 'BitSequence::~BitSequence()': > > > sequence.cc:1394:133: warning: throw will always call terminate() > > > [-Wterminate] > > > throw MurasakiException("Couldn't detach System V shared memory region > > > for "+(seq ? seq->filename:string("(anon)"))+strerror(errno)); > > > > > > ^ > > > > > > sequence.cc:1394:133: note: in C++11 destructors default to noexcept > > > sequence.cc: In member function 'void > > > Hash::writeHistogram(std::ostream&)': > > > sequence.cc:2048:8: error: no match for 'operator!=' (operand types are > > > 'std::ostream {aka std::basic_ostream<char>}' and 'std::ostream {aka > > > std::basic_ostream<char>}') > > > if(of!=cerr) > > > ~~^~~~~~ > > > > > > sequence.cc:2048:8: note: candidate: operator!=(int, int) <built-in> > > > sequence.cc:2048:8: note: no known conversion for argument 2 from > > > 'std::ostream {aka std::basic_ostream<char>}' to 'int' > > > In file included from /usr/include/c++/6/bits/stl_algobase.h:67:0, > > > from /usr/include/c++/6/bits/stl_tree.h:63, > > > from /usr/include/c++/6/set:60, > > > from cmultiset.h:33, > > > from sequence.h:30, > > > from murasaki.h:24, > > > from sequence.cc:28: > > > /usr/include/c++/6/bits/stl_iterator.h:863:5: note: candidate: > > > template<class _IteratorL, class _IteratorR, class _Container> bool > > > __gnu_cxx::operator!=(const __gnu_cxx::__normal_iterator<_IteratorL, > > > _Container>&, const __gnu_cxx::__normal_iterator<_IteratorR, _Container>&) > > > operator!=(const __normal_iterator<_IteratorL, _Container>& __lhs, > > > ^~~~~~~~ > > > > _______________________________________________ > > Debian-med-packaging mailing list > > [email protected] > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > > > > -- > http://fam-tille.de > > _______________________________________________ > Debian-med-packaging mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de
