Hi Andreas, did you get the latest commits? I added something afterwards to fix building on GCC5 again:
------------------------------------------------------------------------ r21688 | sascha-guest | 2016-04-11 19:43:00 +0000 (Mon, 11 Apr 2016) | 2 lines add missing include, necessary for GCC <6 Cheers Sascha > thanks a lot for your bug squashing business. Unfortunately the > package does not build for me: > > ... > g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -W > -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION="\"1.00\"" -lm > AlignedFragment.o Assert.o Block.o Consistency.o GlobalAlign.o LocalAlign.o > Main.o PairAligner.o Matrix.o MultiSequence.o ProbModel.o Score.o > ScoreMatrix.o Sequence.o SparseMatrix.o Tree.o Utilities.o -o proda > -Wl,-z,relro > /usr/bin/ld: errno: TLS definition in /lib/x86_64-linux-gnu/libc.so.6 section > .tbss mismatches non-TLS reference in Main.o > /lib/x86_64-linux-gnu/libc.so.6: error adding symbols: Bad value > collect2: error: ld returned 1 exit status > > Anything you might have forgotten to commit? > > Kind regards > > Andreas. > > On Mon, Apr 11, 2016 at 07:22:30PM +0000, Sascha Steinbiss wrote: >> Author: sascha-guest >> Date: 2016-04-11 19:22:29 +0000 (Mon, 11 Apr 2016) >> New Revision: 21685 >> >> Added: >> trunk/packages/proda/trunk/debian/patches/04-honour_CXX.patch >> trunk/packages/proda/trunk/debian/patches/05-fix_FTBFS_with_GCC6.patch >> Modified: >> trunk/packages/proda/trunk/debian/changelog >> trunk/packages/proda/trunk/debian/patches/series >> Log: >> fix FTBFS >> >> >> Modified: trunk/packages/proda/trunk/debian/changelog >> =================================================================== >> --- trunk/packages/proda/trunk/debian/changelog 2016-04-11 18:55:13 UTC >> (rev 21684) >> +++ trunk/packages/proda/trunk/debian/changelog 2016-04-11 19:22:29 UTC >> (rev 21685) >> @@ -1,3 +1,10 @@ >> +proda (1.0-9.1) unstable; urgency=medium >> + >> + * Team upload. >> + * Fix FTBFS with GCC-6. Closes #812039 >> + >> + -- Sascha Steinbiss <[email protected]> Mon, 11 Apr 2016 19:22:08 >> +0000 >> + >> proda (1.0-9) unstable; urgency=low >> >> * debian/control: re-added David to uploaders, because he really >> >> Added: trunk/packages/proda/trunk/debian/patches/04-honour_CXX.patch >> =================================================================== >> --- trunk/packages/proda/trunk/debian/patches/04-honour_CXX.patch >> (rev 0) >> +++ trunk/packages/proda/trunk/debian/patches/04-honour_CXX.patch >> 2016-04-11 19:22:29 UTC (rev 21685) >> @@ -0,0 +1,24 @@ >> +--- a/Makefile >> ++++ b/Makefile >> +@@ -6,7 +6,7 @@ >> + # 1) Choose C++ compiler. >> + >> ################################################################################ >> + >> +-CXX = g++ >> ++#CXX = g++ >> + >> + >> ################################################################################ >> + # 2) Set C++ flags. >> +@@ -15,10 +15,10 @@ >> + # c) RELEASE mode >> + >> ################################################################################ >> + >> +-CPPFLAGS = -DVERSION="\"1.00\"" >> ++CPPFLAGS+=-DVERSION="\"1.00\"" >> + >> + # debug mode >> +-CXXFLAGS = -g -W -Wall -pedantic >> ++CXXFLAGS+=-g -W -Wall -pedantic >> + >> + # profile mode >> + #CXXFLAGS = -pg -W -Wall -pedantic >> >> Added: trunk/packages/proda/trunk/debian/patches/05-fix_FTBFS_with_GCC6.patch >> =================================================================== >> --- trunk/packages/proda/trunk/debian/patches/05-fix_FTBFS_with_GCC6.patch >> (rev 0) >> +++ trunk/packages/proda/trunk/debian/patches/05-fix_FTBFS_with_GCC6.patch >> 2016-04-11 19:22:29 UTC (rev 21685) >> @@ -0,0 +1,11 @@ >> +--- a/Main.cc >> ++++ b/Main.cc >> +@@ -117,7 +117,7 @@ >> + char *endPtr; >> + long int retVal; >> + >> +- int errno = 0; >> ++ extern int errno; >> + retVal = strtol (data, &endPtr, 0); >> + if (retVal == 0 && (errno != 0 || data == endPtr)) return false; >> + if (errno != 0 && (retVal == LONG_MAX || retVal == LONG_MIN)) return >> false; >> >> Modified: trunk/packages/proda/trunk/debian/patches/series >> =================================================================== >> --- trunk/packages/proda/trunk/debian/patches/series 2016-04-11 18:55:13 UTC >> (rev 21684) >> +++ trunk/packages/proda/trunk/debian/patches/series 2016-04-11 19:22:29 UTC >> (rev 21685) >> @@ -1,4 +1,6 @@ >> 01-fix_gcc4.3_warnings.patch >> 02-fix_CXXFLAGS.patch >> 03-fix_FTBFS_gcc4.3_missing_includes.patch >> +04-honour_CXX.patch >> +05-fix_FTBFS_with_GCC6.patch >> hardening.patch >> >> >> _______________________________________________ >> debian-med-commit mailing list >> [email protected] >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit >> > > -- > http://fam-tille.de
