Hello Andreas, following the latest discussion at #806716 [1], I'm attaching a patch that is intended to replace the "update-debian-rules-dh_clean.patch" on the first message of this bug report, and be used in conjunction with the "rename-python-module-to-dna_jellyfish.patch".
Hopefully both of them accomplish the renaming of the python module (to "dna_jellyfish", as per the upstream's author light suggestion on the mailing list some time ago), and of the Debian binary package (to "python3-dna-jellyfish"). There is still the issue of running the Python tests to be solved (ie. they are currently not run in the unpatched version, and the patches above still don't change the situation). I have been trying to find a better solution than the one proposed on message #25, still with no luck. I'm wondering if you could provide input on whether the approach on #25 is acceptable, or some hints or ideas on how to better solve the test running issue? I'm also wondering if it would be a good time to try to contact upstream again in the hopes of eventually fixing the conflict upstream, maybe via github? I'd be willing to do so, provided you find it acceptable! Best regards, and thanks again, [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806716#109 -- Diego M. Rodriguez 36B3 42A9 9F2F 2CFB F79B FF9B B6C4 B901 06BC E232
diff --git a/debian/control b/debian/control
index 8f55e6a..8ab8176 100644
--- a/debian/control
+++ b/debian/control
@@ -90,7 +90,7 @@ Description: count k-mers in DNA sequences (development files of jellyfish)
This package contains the development files (static library and
header files)
-Package: python3-jellyfish
+Package: python3-dna-jellyfish
Architecture: any-amd64
Section: python
Depends: ${python3:Depends},
diff --git a/debian/rules b/debian/rules
index 790ad39..7be0f55 100755
--- a/debian/rules
+++ b/debian/rules
@@ -22,8 +22,8 @@ override_dh_auto_install:
override_dh_install:
# dh_install -X*.a -X*.la -Xpkgconfig
- dh_install -ppython3-jellyfish
- pybuild -d swig/python --name jellyfish
+ dh_install -ppython3-dna-jellyfish
+ pybuild -d swig/python --name dna-jellyfish
dh_auto_configure --sourcedirectory=swig/perl5
dh_auto_build --sourcedirectory=swig/perl5
@@ -55,7 +55,7 @@ override_dh_clean:
rmdir debian/tmp_save_tests ; \
fi
rm -f tests/compat.sh
- rm -f swig/python/jellyfish*
+ rm -f swig/python/jellyfish* swig/python/dna_jellyfish.py
override_dh_auto_build:
mkdir -p debian/tmp_save_tests
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