Source: fastqc Version: 0.11.5+dfsg-5 Severity: serious Tags: stretch sid User: [email protected] Usertags: qa-ftbfs-20161202 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<BUILDDIR>>/fastqc-0.11.5+dfsg' > dh_auto_build > ant -Duser.name debian > Buildfile: /<<BUILDDIR>>/fastqc-0.11.5+dfsg/build.xml > > build-subprojects: > > init: > [mkdir] Created dir: /<<BUILDDIR>>/fastqc-0.11.5+dfsg/bin > [copy] Copying 86 files to /<<BUILDDIR>>/fastqc-0.11.5+dfsg/bin > > build-project: > [echo] FastQC: /<<BUILDDIR>>/fastqc-0.11.5+dfsg/build.xml > [javac] Compiling 67 source files to /<<BUILDDIR>>/fastqc-0.11.5+dfsg/bin > [javac] warning: [options] bootstrap class path not set in conjunction > with -source 1.5 > [javac] warning: [options] source value 1.5 is obsolete and will be > removed in a future release > [javac] warning: [options] target value 1.5 is obsolete and will be > removed in a future release > [javac] warning: [options] To suppress warnings about obsolete options, > use -Xlint:-options. > [javac] > /<<BUILDDIR>>/fastqc-0.11.5+dfsg/uk/ac/babraham/FastQC/Sequence/BAMFile.java:30: > error: cannot find symbol > [javac] import htsjdk.samtools.SAMFileReader; > [javac] ^ > [javac] symbol: class SAMFileReader > [javac] location: package htsjdk.samtools > [javac] > /<<BUILDDIR>>/fastqc-0.11.5+dfsg/uk/ac/babraham/FastQC/Sequence/BAMFile.java:47: > error: cannot find symbol > [javac] private SAMFileReader br; > [javac] ^ > [javac] symbol: class SAMFileReader > [javac] location: class BAMFile > [javac] > /<<BUILDDIR>>/fastqc-0.11.5+dfsg/uk/ac/babraham/FastQC/Sequence/BAMFile.java:59: > error: cannot find symbol > [javac] > SAMFileReader.setDefaultValidationStringency(ValidationStringency.SILENT); > [javac] ^ > [javac] symbol: variable SAMFileReader > [javac] location: class BAMFile > [javac] > /<<BUILDDIR>>/fastqc-0.11.5+dfsg/uk/ac/babraham/FastQC/Sequence/BAMFile.java:63: > error: cannot find symbol > [javac] br = new SAMFileReader(fis); > [javac] ^ > [javac] symbol: class SAMFileReader > [javac] location: class BAMFile > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [javac] 4 errors > [javac] 4 warnings > > BUILD FAILED > /<<BUILDDIR>>/fastqc-0.11.5+dfsg/build.xml:36: Compile failed; see the > compiler error output for details. > > Total time: 1 second > dh_auto_build: ant -Duser.name debian returned exit code 1 > debian/rules:10: recipe for target 'override_dh_auto_build' failed > make[1]: *** [override_dh_auto_build] Error 2 The full build log is available from: http://aws-logs.debian.net/2016/12/02/fastqc_0.11.5+dfsg-5_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
