On Tue, 2017-01-17 at 22:35 +0100, Pietro Battiston wrote:
> Il giorno mar, 17/01/2017 alle 18.24 +0000, Ghislain Vaillant ha
> scritto:
> > [...]
> > There are 2 options:
> >
> > 1) Do an upload with tests enabled, knowing it would FTBFS, and file
> > an
> > RC for it. Once numpy gets eventually fixed, request a binNMU to
> > clear
> > the RC.
> >
> > 2) Mark #851613 severity RC, wait for a suitable version of numpy to
> > be
> > uploaded and make the upload with tests enabled and clearing the RC.
> >
> > In the state things are currently, bottleneck should not be released
> > in
> > Stretch. These 2 options would achieve exactly that. Feel free to
> > bring
> > your usual sponsor along to the discussion, perhaps he or she would
> > have a preference.
> >
>
> I am a bit confused. It seems to me that bottleneck itself is not in
> worse shape than before the numpy regression was introduced.
It is still not worth releasing as it is. Sure the binary packages do
build, but they fail to test with the current version of Numpy.
Assuming, numpy stays in this version for the release, i.e. without the
fix for the regression, then we'd be effectively releasing a buggy
bottleneck package for Stretch.
In versioning semantics, think of it as:
bottleneck: install_requires = ["numpy>= 1.12.1,<1.12.0"]
> So while
> we can discuss what is the best move for numpy, I don't follow you when
> you say that "In the state things are currently, bottleneck should not
> be released in Stretch". That said, assuming you are right on this,
> does 2) have any disadvantage compared to 1) (other than not fixing
> #851520 immediately)?
I have a better idea. I am forwarding you the modifications I had to
make in order to get the packaging to work with its autopkgtest test
suite, plus associated log from a build done on my machine in a clean
chroot.
The trick here is that I temporarily bypass the test failures so the
build carries on anyway despite the failures. But with this, you will
both get the test logs from the build logs to motivate the RC *and*
autopkgtest logs to check when the regression from numpy is fixed.
Your Python 3 package was also buggy: the substvar to use in d/control
is python3:Depends not python:Depends, and there was no call to
dh_numpy3. I fixed this using a standard override on dh_python{2,3} to
call the appropriate dh_numpy{,3} command.
You may upload a new version of bottleneck with these changes, and then
raise #851613 to RC once you get the first build logs out.
How's that sounding?
GhisFrom 532aef978651379bb2ce40d5309b9b1c699c2b05 Mon Sep 17 00:00:00 2001
From: Ghislain Antony Vaillant <ghisv...@gmail.com>
Date: Tue, 17 Jan 2017 22:59:19 +0000
Subject: [PATCH 5/5] Fix dh_python{2,3} / dh_numpy{,3} calls
---
debian/control | 2 +-
debian/rules | 9 ++++++++-
2 files changed, 9 insertions(+), 2 deletions(-)
diff --git a/debian/control b/debian/control
index 58bf91e..9a6d192 100644
--- a/debian/control
+++ b/debian/control
@@ -29,7 +29,7 @@ Description: Fast NumPy array functions written in C - Python 2
Package: python3-bottleneck
Architecture: any
-Depends: ${misc:Depends}, ${python:Depends}, ${shlibs:Depends}
+Depends: ${misc:Depends}, ${python3:Depends}, ${shlibs:Depends}
Enhances: python3-pandas
Description: Fast NumPy array functions written in C - Python 3
Bottleneck is a collection of fast NumPy array functions written in C.
diff --git a/debian/rules b/debian/rules
index 8ea155e..1852cca 100755
--- a/debian/rules
+++ b/debian/rules
@@ -16,5 +16,12 @@ override_dh_auto_test:
override_dh_auto_install:
dh_auto_install
- dh_numpy
dh_installchangelogs RELEASE.rst
+
+override_dh_python2:
+ dh_python2
+ dh_numpy
+
+override_dh_python3:
+ dh_python3
+ dh_numpy3
--
2.11.0
From d37f6aebd2c89a4024e14c71f7bde215e786109e Mon Sep 17 00:00:00 2001
From: Ghislain Antony Vaillant <ghisv...@gmail.com>
Date: Tue, 17 Jan 2017 19:13:31 +0000
Subject: [PATCH 4/5] Clean build artefacts
---
debian/clean | 4 ++++
1 file changed, 4 insertions(+)
create mode 100644 debian/clean
diff --git a/debian/clean b/debian/clean
new file mode 100644
index 0000000..320765d
--- /dev/null
+++ b/debian/clean
@@ -0,0 +1,4 @@
+bottleneck/src/move.c
+bottleneck/src/nonreduce.c
+bottleneck/src/nonreduce_axis.c
+bottleneck/src/reduce.c
--
2.11.0
From d2ef202ee080cc6480152af4d09edcfcc4596e8e Mon Sep 17 00:00:00 2001
From: Ghislain Antony Vaillant <ghisv...@gmail.com>
Date: Tue, 17 Jan 2017 19:11:17 +0000
Subject: [PATCH 3/5] Bypass test failures temporarily
---
debian/rules | 3 +++
1 file changed, 3 insertions(+)
diff --git a/debian/rules b/debian/rules
index 3d37c48..8ea155e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -11,6 +11,9 @@ override_dh_auto_build:
dh_auto_build
http_proxy='127.0.0.1:9' python setup.py build_sphinx
+override_dh_auto_test:
+ dh_auto_test || true
+
override_dh_auto_install:
dh_auto_install
dh_numpy
--
2.11.0
From 21e9f51431db8019e6b89f5d64d3d8ce86ebb609 Mon Sep 17 00:00:00 2001
From: Ghislain Antony Vaillant <ghisv...@gmail.com>
Date: Tue, 17 Jan 2017 19:09:58 +0000
Subject: [PATCH 2/5] Add autopkgtest test suite
---
debian/tests/control | 7 +++++++
1 file changed, 7 insertions(+)
create mode 100644 debian/tests/control
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..2562154
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,7 @@
+Test-Command: cd $AUTOPKGTEST_TMP
+ ; python -c "import bottleneck as bn; bn.test()"
+Depends: python-bottleneck, python-nose
+
+Test-Command: cd $AUTOPKGTEST_TMP
+ ; python3 -c "import bottleneck as bn; bn.test()"
+Depends: python3-bottleneck, python3-nose
--
2.11.0
From 10030c75fcf359cf495d12ed3b0afb808f539f2b Mon Sep 17 00:00:00 2001
From: Ghislain Antony Vaillant <ghisv...@gmail.com>
Date: Mon, 16 Jan 2017 20:33:10 +0000
Subject: [PATCH 1/5] Enable tests during build
---
debian/control | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/debian/control b/debian/control
index 31db90d..58bf91e 100644
--- a/debian/control
+++ b/debian/control
@@ -7,7 +7,8 @@ Build-Depends: dh-python, python-setuptools (>= 0.6b3), python3-setuptools,
python-all, python-all-dev (>= 2.6.6-3),
python3-all, python3-all-dev,
python-numpy, python3-numpy,
- python-sphinx | python3-sphinx
+ python-sphinx | python3-sphinx,
+ python-nose, python3-nose
Standards-Version: 3.9.8
Homepage: http://berkeleyanalytics.com/bottleneck
Vcs-Browser: https://anonscm.debian.org/cgit/collab-maint/bottleneck.git
--
2.11.0
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies...Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
Done
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas-common
libblas3 libbsd0 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu57
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
libsigsegv2 libssl1.1 libtimedate-perl libtool libunistring0 libxml2 m4
man-db mime-support po-debconf python python-alabaster python-all
python-all-dev python-babel python-babel-localedata python-dev
python-docutils python-imagesize python-jinja2 python-markupsafe
python-minimal python-nose python-numpy python-pkg-resources python-pygments
python-roman python-setuptools python-six python-sphinx python-tz python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-minimal python3-nose python3-numpy python3-pkg-resources
python3-setuptools python3.5 python3.5-dev python3.5-minimal sgml-base
sphinx-common xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl python-doc python-tk fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-jinja2-doc python-coverage python-nose-doc
gfortran python-numpy-dbg python-numpy-doc ttf-bitstream-vera
python-setuptools-doc python-sphinx-rtd-theme libjs-mathjax dvipng
texlive-latex-extra texlive-fonts-recommended texlive-generic-extra
sphinx-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3-numpy-dbg python3.5-venv python3.5-doc sgml-base-doc
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
javascript-common libltdl-dev libmail-sendmail-perl docutils-doc
libpaper-utils python-pil python-chardet
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas-common
libblas3 libbsd0 libcroco3 libexpat1 libexpat1-dev libffi6
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu57
libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
libsigsegv2 libssl1.1 libtimedate-perl libtool libunistring0 libxml2 m4
man-db mime-support po-debconf python python-alabaster python-all
python-all-dev python-babel python-babel-localedata python-dev
python-docutils python-imagesize python-jinja2 python-markupsafe
python-minimal python-nose python-numpy python-pkg-resources python-pygments
python-roman python-setuptools python-six python-sphinx python-tz python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-minimal python3-nose python3-numpy python3-pkg-resources
python3-setuptools python3.5 python3.5-dev python3.5-minimal sgml-base
sphinx-common xml-core
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Get:96 http://the.earth.li/debian unstable/main amd64 python-sphinx all 1.4.9-2 [434 kB]
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Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:amd64 (2.7.13-1) ...
Setting up python2.7-dev (2.7.13-1) ...
Setting up python (2.7.13-1) ...
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.3~rc1-1) ...
Setting up libpython3-stdlib:amd64 (3.5.1-4) ...
Setting up libpython-dev:amd64 (2.7.13-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libpython3.5:amd64 (3.5.3~rc1-1) ...
Setting up python-dev (2.7.13-1) ...
Setting up python-tz (2016.7-0.2) ...
Setting up libpython-all-dev:amd64 (2.7.13-1) ...
Setting up python-imagesize (0.7.1-1) ...
Setting up python-alabaster (0.7.8-1) ...
Setting up python-pkg-resources (32.3.1-1) ...
Setting up python-roman (2.0.0-2) ...
Setting up libpython3.5-dev:amd64 (3.5.3~rc1-1) ...
Setting up python-markupsafe (0.23-3) ...
Setting up python-numpy (1:1.12.0-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up python-six (1.10.0-3) ...
Setting up python-pygments (2.1.3+dfsg-1) ...
Setting up python3.5-dev (3.5.3~rc1-1) ...
Setting up python-nose (1.3.7-2) ...
Setting up python-all (2.7.13-1) ...
Setting up libpython3-dev:amd64 (3.5.1-4) ...
Setting up python-setuptools (32.3.1-1) ...
Setting up po-debconf (1.0.20) ...
Setting up python-jinja2 (2.9.4-1) ...
Setting up python-babel (2.3.4+dfsg.1-2) ...
update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python-all-dev (2.7.13-1) ...
Setting up libpython3-all-dev:amd64 (3.5.1-4) ...
Processing triggers for sgml-base (1.29) ...
Setting up docutils-common (0.13.1+dfsg-1) ...
Processing triggers for sgml-base (1.29) ...
Setting up python-docutils (0.13.1+dfsg-1) ...
update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.4.9-2) ...
Setting up dh-autoreconf (13) ...
Setting up python3 (3.5.1-4) ...
Setting up python3-numpy (1:1.12.0-1) ...
Setting up python3-dev (3.5.1-4) ...
Setting up python3-pkg-resources (32.3.1-1) ...
Setting up dh-strip-nondeterminism (0.029-2) ...
Setting up python3-nose (1.3.7-2) ...
Setting up python3-all (3.5.1-4) ...
Setting up python3-setuptools (32.3.1-1) ...
Setting up dh-python (2.20160818) ...
Setting up debhelper (10.2.3) ...
Setting up python3-all-dev (3.5.1-4) ...
Setting up autopkgtest-satdep (0) ...
Processing triggers for libc-bin (2.24-9) ...
(Reading database ... 20464 files and directories currently installed.)
Removing autopkgtest-satdep (0) ...
Get:1 file:/tmp/autopkgtest.KTER2d/binaries InRelease
Ign:1 file:/tmp/autopkgtest.KTER2d/binaries InRelease
Get:2 file:/tmp/autopkgtest.KTER2d/binaries Release [816 B]
Get:2 file:/tmp/autopkgtest.KTER2d/binaries Release [816 B]
Get:3 file:/tmp/autopkgtest.KTER2d/binaries Release.gpg
Ign:3 file:/tmp/autopkgtest.KTER2d/binaries Release.gpg
Get:4 file:/tmp/autopkgtest.KTER2d/binaries Packages [5003 B]
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies...Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
Done
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following additional packages will be installed:
libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libssl1.1
mime-support python python-bottleneck python-minimal python-nose
python-numpy python-pkg-resources python2.7 python2.7-minimal
Suggested packages:
python-doc python-tk python-coverage python-nose-doc gfortran python-dev
python-numpy-dbg python-numpy-doc python-setuptools python2.7-doc
binfmt-support
Recommended packages:
file
The following NEW packages will be installed:
libblas-common libblas3 libexpat1 libffi6 libgfortran3 liblapack3
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libssl1.1
mime-support python python-bottleneck python-minimal python-nose
python-numpy python-pkg-resources python2.7 python2.7-minimal
0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 10.5 MB/10.5 MB of archives.
After this operation, 42.1 MB of additional disk space will be used.
Get:1 file:/tmp/autopkgtest.KTER2d/binaries python-bottleneck 1.2.0-1.1 [83.3 kB]
Get:2 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-1 [389 kB]
Get:3 http://mirror.lchost.net/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-1 [1382 kB]
Get:6 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libexpat1 amd64 2.2.0-2 [83.3 kB]
Get:7 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libffi6 amd64 3.2.1-6 [20.4 kB]
Get:11 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-1 [19.9 kB]
Get:17 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 python-numpy amd64 1:1.12.0-1 [1934 kB]
Get:4 http://mirror.lchost.net/debian unstable/main amd64 python-minimal amd64 2.7.13-1 [40.5 kB]
Get:5 http://mirror.lchost.net/debian unstable/main amd64 mime-support all 3.60 [36.7 kB]
Get:8 http://mirror.lchost.net/debian unstable/main amd64 libssl1.1 amd64 1.1.0c-2 [1337 kB]
Get:9 http://mirror.lchost.net/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-1 [1898 kB]
Get:19 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 python-nose all 1.3.7-2 [132 kB]
Get:10 http://mirror.lchost.net/debian unstable/main amd64 python2.7 amd64 2.7.13-1 [285 kB]
Get:12 http://mirror.lchost.net/debian unstable/main amd64 python amd64 2.7.13-1 [154 kB]
Get:13 http://mirror.lchost.net/debian unstable/main amd64 libgfortran3 amd64 6.3.0-2 [265 kB]
Get:14 http://mirror.lchost.net/debian unstable/main amd64 libblas-common amd64 3.7.0-1 [14.0 kB]
Get:15 http://mirror.lchost.net/debian unstable/main amd64 libblas3 amd64 3.7.0-1 [155 kB]
Get:16 http://mirror.lchost.net/debian unstable/main amd64 liblapack3 amd64 3.7.0-1 [2141 kB]
Get:18 http://mirror.lchost.net/debian unstable/main amd64 python-pkg-resources all 32.3.1-1 [166 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 10.5 MB in 2s (5040 kB/s)
Selecting previously unselected package libpython2.7-minimal:amd64.
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Preparing to unpack .../0-libpython2.7-minimal_2.7.13-1_amd64.deb ...
Unpacking libpython2.7-minimal:amd64 (2.7.13-1) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../1-python2.7-minimal_2.7.13-1_amd64.deb ...
Unpacking python2.7-minimal (2.7.13-1) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../2-python-minimal_2.7.13-1_amd64.deb ...
Unpacking python-minimal (2.7.13-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../3-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../4-libexpat1_2.2.0-2_amd64.deb ...
Unpacking libexpat1:amd64 (2.2.0-2) ...
Selecting previously unselected package libffi6:amd64.
Preparing to unpack .../5-libffi6_3.2.1-6_amd64.deb ...
Unpacking libffi6:amd64 (3.2.1-6) ...
Selecting previously unselected package libssl1.1:amd64.
Preparing to unpack .../6-libssl1.1_1.1.0c-2_amd64.deb ...
Unpacking libssl1.1:amd64 (1.1.0c-2) ...
Selecting previously unselected package libpython2.7-stdlib:amd64.
Preparing to unpack .../7-libpython2.7-stdlib_2.7.13-1_amd64.deb ...
Unpacking libpython2.7-stdlib:amd64 (2.7.13-1) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../8-python2.7_2.7.13-1_amd64.deb ...
Unpacking python2.7 (2.7.13-1) ...
Selecting previously unselected package libpython-stdlib:amd64.
Preparing to unpack .../9-libpython-stdlib_2.7.13-1_amd64.deb ...
Unpacking libpython-stdlib:amd64 (2.7.13-1) ...
Setting up libpython2.7-minimal:amd64 (2.7.13-1) ...
Setting up python2.7-minimal (2.7.13-1) ...
Setting up python-minimal (2.7.13-1) ...
Selecting previously unselected package python.
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Preparing to unpack .../0-python_2.7.13-1_amd64.deb ...
Unpacking python (2.7.13-1) ...
Selecting previously unselected package libgfortran3:amd64.
Preparing to unpack .../1-libgfortran3_6.3.0-2_amd64.deb ...
Unpacking libgfortran3:amd64 (6.3.0-2) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../2-libblas-common_3.7.0-1_amd64.deb ...
Unpacking libblas-common (3.7.0-1) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../3-libblas3_3.7.0-1_amd64.deb ...
Unpacking libblas3 (3.7.0-1) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../4-liblapack3_3.7.0-1_amd64.deb ...
Unpacking liblapack3 (3.7.0-1) ...
Selecting previously unselected package python-numpy.
Preparing to unpack .../5-python-numpy_1%3a1.12.0-1_amd64.deb ...
Unpacking python-numpy (1:1.12.0-1) ...
Selecting previously unselected package python-bottleneck.
Preparing to unpack .../6-python-bottleneck.deb ...
Unpacking python-bottleneck (1.2.0-1.1) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../7-python-pkg-resources_32.3.1-1_all.deb ...
Unpacking python-pkg-resources (32.3.1-1) ...
Selecting previously unselected package python-nose.
Preparing to unpack .../8-python-nose_1.3.7-2_all.deb ...
Unpacking python-nose (1.3.7-2) ...
Setting up libexpat1:amd64 (2.2.0-2) ...
Setting up mime-support (3.60) ...
Setting up libblas-common (3.7.0-1) ...
Setting up libgfortran3:amd64 (6.3.0-2) ...
Setting up libblas3 (3.7.0-1) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Processing triggers for libc-bin (2.24-9) ...
Setting up libssl1.1:amd64 (1.1.0c-2) ...
Setting up libffi6:amd64 (3.2.1-6) ...
Setting up libpython2.7-stdlib:amd64 (2.7.13-1) ...
Setting up liblapack3 (3.7.0-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up python2.7 (2.7.13-1) ...
Setting up libpython-stdlib:amd64 (2.7.13-1) ...
Setting up python (2.7.13-1) ...
Setting up python-pkg-resources (32.3.1-1) ...
Setting up python-numpy (1:1.12.0-1) ...
Setting up python-bottleneck (1.2.0-1.1) ...
Setting up python-nose (1.3.7-2) ...
Setting up autopkgtest-satdep (0) ...
Processing triggers for libc-bin (2.24-9) ...
(Reading database ... 14727 files and directories currently installed.)
Removing autopkgtest-satdep (0) ...
Running unit tests for bottleneck
NumPy version 1.12.0
NumPy relaxed strides checking option: True
NumPy is installed in /usr/lib/python2.7/dist-packages/numpy
Python version 2.7.13 (default, Dec 18 2016, 20:19:42) [GCC 6.2.1 20161215]
nose version 1.3.7
command1 FAIL stderr: .................................................................F....................................................F..................................................
Get:1 file:/tmp/autopkgtest.KTER2d/binaries InRelease
Ign:1 file:/tmp/autopkgtest.KTER2d/binaries InRelease
Get:2 file:/tmp/autopkgtest.KTER2d/binaries Release [816 B]
Get:2 file:/tmp/autopkgtest.KTER2d/binaries Release [816 B]
Get:3 file:/tmp/autopkgtest.KTER2d/binaries Release.gpg
Ign:3 file:/tmp/autopkgtest.KTER2d/binaries Release.gpg
Get:4 file:/tmp/autopkgtest.KTER2d/binaries Packages [5003 B]
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies...Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
Done
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following additional packages will be installed:
dh-python libblas-common libblas3 libexpat1 libgfortran3 liblapack3
libmpdec2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib
libssl1.1 mime-support python3 python3-bottleneck python3-minimal
python3-nose python3-numpy python3-pkg-resources python3.5 python3.5-minimal
Suggested packages:
python3-doc python3-tk python3-venv python-nose-doc gfortran
python-numpy-doc python3-dev python3-numpy-dbg python3-setuptools
python3.5-venv python3.5-doc binfmt-support
Recommended packages:
file
The following NEW packages will be installed:
dh-python libblas-common libblas3 libexpat1 libgfortran3 liblapack3
libmpdec2 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib
libssl1.1 mime-support python3 python3-bottleneck python3-minimal
python3-nose python3-numpy python3-pkg-resources python3.5 python3.5-minimal
0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 11.1 MB/11.2 MB of archives.
After this operation, 50.1 MB of additional disk space will be used.
Get:1 file:/tmp/autopkgtest.KTER2d/binaries python3-bottleneck 1.2.0-1.1 [86.2 kB]
Get:2 http://mirror.bytemark.co.uk/debian unstable/main amd64 libssl1.1 amd64 1.1.0c-2 [1337 kB]
Get:3 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.3~rc1-1 [573 kB]
Get:4 http://mirror.lchost.net/debian unstable/main amd64 libexpat1 amd64 2.2.0-2 [83.3 kB]
Get:5 http://the.earth.li/debian unstable/main amd64 python3.5-minimal amd64 3.5.3~rc1-1 [1691 kB]
Get:6 http://mirror.lchost.net/debian unstable/main amd64 python3-minimal amd64 3.5.1-4 [35.3 kB]
Get:7 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 mime-support all 3.60 [36.7 kB]
Get:10 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 python3.5 amd64 3.5.3~rc1-1 [229 kB]
Get:13 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 python3 amd64 3.5.1-4 [21.6 kB]
Get:14 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 libgfortran3 amd64 6.3.0-2 [265 kB]
Get:17 http://the.earth.li/debian unstable/main amd64 liblapack3 amd64 3.7.0-1 [2141 kB]
Get:20 http://debian.mirror.uk.sargasso.net/debian unstable/main amd64 python3-nose all 1.3.7-2 [132 kB]
Get:8 http://mirror.bytemark.co.uk/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB]
Get:9 http://mirror.bytemark.co.uk/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.3~rc1-1 [2167 kB]
Get:18 http://the.earth.li/debian unstable/main amd64 python3-numpy amd64 1:1.12.0-1 [1934 kB]
Get:11 http://mirror.bytemark.co.uk/debian unstable/main amd64 libpython3-stdlib amd64 3.5.1-4 [18.6 kB]
Get:12 http://mirror.bytemark.co.uk/debian unstable/main amd64 dh-python all 2.20160818 [83.0 kB]
Get:15 http://mirror.bytemark.co.uk/debian unstable/main amd64 libblas-common amd64 3.7.0-1 [14.0 kB]
Get:16 http://mirror.bytemark.co.uk/debian unstable/main amd64 libblas3 amd64 3.7.0-1 [155 kB]
Get:19 http://the.earth.li/debian unstable/main amd64 python3-pkg-resources all 32.3.1-1 [137 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 11.1 MB in 1s (6960 kB/s)
Selecting previously unselected package libssl1.1:amd64.
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Preparing to unpack .../00-libssl1.1_1.1.0c-2_amd64.deb ...
Unpacking libssl1.1:amd64 (1.1.0c-2) ...
Selecting previously unselected package libpython3.5-minimal:amd64.
Preparing to unpack .../01-libpython3.5-minimal_3.5.3~rc1-1_amd64.deb ...
Unpacking libpython3.5-minimal:amd64 (3.5.3~rc1-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../02-libexpat1_2.2.0-2_amd64.deb ...
Unpacking libexpat1:amd64 (2.2.0-2) ...
Selecting previously unselected package python3.5-minimal.
Preparing to unpack .../03-python3.5-minimal_3.5.3~rc1-1_amd64.deb ...
Unpacking python3.5-minimal (3.5.3~rc1-1) ...
Selecting previously unselected package python3-minimal.
Preparing to unpack .../04-python3-minimal_3.5.1-4_amd64.deb ...
Unpacking python3-minimal (3.5.1-4) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../05-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libmpdec2:amd64.
Preparing to unpack .../06-libmpdec2_2.4.2-1_amd64.deb ...
Unpacking libmpdec2:amd64 (2.4.2-1) ...
Selecting previously unselected package libpython3.5-stdlib:amd64.
Preparing to unpack .../07-libpython3.5-stdlib_3.5.3~rc1-1_amd64.deb ...
Unpacking libpython3.5-stdlib:amd64 (3.5.3~rc1-1) ...
Selecting previously unselected package python3.5.
Preparing to unpack .../08-python3.5_3.5.3~rc1-1_amd64.deb ...
Unpacking python3.5 (3.5.3~rc1-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../09-libpython3-stdlib_3.5.1-4_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.5.1-4) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../10-dh-python_2.20160818_all.deb ...
Unpacking dh-python (2.20160818) ...
Setting up libssl1.1:amd64 (1.1.0c-2) ...
Setting up libpython3.5-minimal:amd64 (3.5.3~rc1-1) ...
Setting up libexpat1:amd64 (2.2.0-2) ...
Setting up python3.5-minimal (3.5.3~rc1-1) ...
Setting up python3-minimal (3.5.1-4) ...
Selecting previously unselected package python3.
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Running unit tests for bottleneck
NumPy version 1.12.0
NumPy relaxed strides checking option: True
NumPy is installed in /usr/lib/python3/dist-packages/numpy
Python version 3.5.3rc1 (default, Jan 3 2017, 04:40:57) [GCC 6.3.0 20161229]
nose version 1.3.7
command2 FAIL stderr: .................................................................F....................................................F..................................................
