Package: release.debian.org Severity: normal User: release.debian....@packages.debian.org Usertags: unblock
Please unblock package petsc A late bug report came in (#852514) noting that libpetsc3.7-dev was leaving stray alternatives behind. Release 3.7.5+dfsg1-4 fixes the problem. The bug was marked important, but I would actually treat it as serious for violating policy. This release should go into stretch, or upgrades from stretch later on will be messier than they should be. This release also tidies up recommended packages. petsc 3.7.5+dfsg1-4 is built on all tier 1 architectures. Bugs fixed: #852514 important ("serious") debdiff attached unblock petsc/3.7.5+dfsg1-4 -- System Information: Debian Release: 9.0 APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.9.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
diff -Nru petsc-3.7.5+dfsg1/debian/changelog petsc-3.7.5+dfsg1/debian/changelog --- petsc-3.7.5+dfsg1/debian/changelog 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/changelog 2017-02-06 05:03:51.000000000 +0800 @@ -1,3 +1,15 @@ +petsc (3.7.5+dfsg1-4) unstable; urgency=medium + + * Don't duplicate -dev dependencies. -lhdf5 and -lsuperlu are + invoked in PETSc.pc, so we Depend on their dev packages, we don't + simply Recommend them. + * Move petsc3.7 and petsc3.7-real alternatives handling from + libpetsc3.7-dev to libpetsc3.7.5-dev. Similarly petsc3.7-complex. + Otherwise alternatives for older patch versions are left unowned. + Closes: #852514. + + -- Drew Parsons <dpars...@debian.org> Mon, 06 Feb 2017 05:03:51 +0800 + petsc (3.7.5+dfsg1-3) unstable; urgency=medium * Update libgfortran-5-dev dependency to gfortran to ensure diff -Nru petsc-3.7.5+dfsg1/debian/control petsc-3.7.5+dfsg1/debian/control --- petsc-3.7.5+dfsg1/debian/control 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/control 2017-02-06 05:03:51.000000000 +0800 @@ -45,12 +45,11 @@ Depends: libpetsc3.7.5 (= ${binary:Version}), ${MPI:Depends}, libsuitesparse-dev, libspooles-dev, libhypre-dev (>= 2.0.0.dfsg-7), libptscotch-dev, libblacs-mpi-dev, libscalapack-mpi-dev, libmumps-dev, libfftw3-dev, libfftw3-mpi-dev, libssl-dev, gfortran, - libhdf5-mpi-dev, + libhdf5-mpi-dev (>= 1.8.8), libsuperlu-dev (>= 5.2), ${misc:Depends}, ${python:Depends} Conflicts: libpetsc3.6.3-dev (<< 3.6.3.dfsg2-2), libpetsc-complex-3.6.3-dev (<< 3.6.3.dfsg2-2), libpetsc3.6.2-dev (<= 3.6.2.dfsg1-3), libpetsc-complex-3.6.2-dev (<= 3.6.2.dfsg1-3) -Recommends: libhdf5-mpi-dev (>= 1.8.8), libsuperlu-dev (>= 5.2), - tcsh | csh | c-shell, ksh | mksh | pdksh | zsh +Recommends: tcsh | csh | c-shell, ksh | mksh | pdksh | zsh Suggests: petsc-dev (= ${binary:Version}), libpetsc3.7.5-dbg (= ${binary:Version}), petsc3.7.5-doc (= ${binary:Version}), libluminate-dev Description: Static libraries, shared links, header files for PETSc PETSc is the "Portable Extensible Toolkit for Scientific Computation", a suite @@ -168,12 +167,11 @@ Depends: libpetsc-complex-3.7.5 (= ${binary:Version}), ${MPI:Depends}, libsuitesparse-dev, libspooles-dev, libhypre-dev (>= 2.0.0.dfsg-7), libptscotch-dev, libblacs-mpi-dev, libscalapack-mpi-dev, libmumps-dev, libfftw3-dev, libfftw3-mpi-dev, libssl-dev, gfortran, - libhdf5-mpi-dev, + libhdf5-mpi-dev (>= 1.8.8), libsuperlu-dev (>= 5.2), ${misc:Depends}, ${python:Depends} Conflicts: libpetsc-complex-3.6.3-dev (<< 3.6.3.dfsg2-2), libpetsc3.6.3-dev (<< 3.6.3.dfsg2-2), libpetsc3.6.2-dev (<= 3.6.2.dfsg1-3), libpetsc-complex-3.6.2-dev (<= 3.6.2.dfsg1-3) -Recommends: libhdf5-mpi-dev (>= 1.8.8), libsuperlu-dev (>= 5.2), - tcsh | csh | c-shell, ksh | mksh | pdksh | zsh +Recommends: tcsh | csh | c-shell, ksh | mksh | pdksh | zsh Suggests: petsc-dev (= ${binary:Version}), libpetsc-complex-3.7.5-dbg (= ${binary:Version}), petsc3.7.5-doc (= ${binary:Version}), libluminate-dev Description: Static libraries, shared links, header files for PETSc PETSc is the "Portable Extensible Toolkit for Scientific Computation", a suite diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.postinst petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.postinst --- petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.postinst 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.postinst 2017-02-06 05:03:51.000000000 +0800 @@ -2,6 +2,8 @@ DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ +SONAME=__PETSC_SONAME_VERSION__ + PETSC_VERSION=__PETSC_VERSION__ PETSC_ARCH=${DEB_HOST_MULTIARCH} PETSC_REAL_ARCH=${PETSC_ARCH}-real @@ -35,6 +37,13 @@ # alternative base version of petsc real update-alternatives --install /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_real.so libpetsc_real.so /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_real.so.${PETSC_VERSION} ${PETSC_VERSION_NUMBER}77 +# alternative petsc for this X.Y soname (e.g. real or complex) +update-alternatives --install /usr/lib/petscdir/${SONAME} petsc${SONAME} ${PETSC_DIR_REAL} ${PETSC_VERSION_NUMBER}77 + +# alternative real petsc for this X.Y soname +update-alternatives --install /usr/lib/petscdir/${SONAME}-real petsc${SONAME}-real ${PETSC_DIR_REAL} ${PETSC_VERSION_NUMBER}77 + + fi diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.prerm petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.prerm --- petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.prerm 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc3.7.5-dev.prerm 2017-02-06 05:03:51.000000000 +0800 @@ -2,14 +2,23 @@ DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ +SONAME=__PETSC_SONAME_VERSION__ + PETSC_VERSION=__PETSC_VERSION__ PETSC_ARCH=${DEB_HOST_MULTIARCH} PETSC_REAL_ARCH=${PETSC_ARCH}-real +PETSC_DIR_REAL=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_REAL_ARCH} + # Remove alternatives links if [ "$1" = "remove" ]; then update-alternatives --remove petsc /usr/lib/petscdir/${PETSC_VERSION}/${PETSC_REAL_ARCH} update-alternatives --remove libpetsc_real.so /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_real.so.${PETSC_VERSION} + + # remove general X.Y soname alternatives + update-alternatives --remove petsc${SONAME} ${PETSC_DIR_REAL} + update-alternatives --remove petsc${SONAME}-real ${PETSC_DIR_REAL} + fi #DEBHELPER# diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.postinst petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.postinst --- petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.postinst 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.postinst 1970-01-01 08:00:00.000000000 +0800 @@ -1,25 +0,0 @@ -#!/bin/sh -e - -DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ - -PETSC_VERSION=__PETSC_VERSION__ -PETSC_ARCH=${DEB_HOST_MULTIARCH} -PETSC_REAL_ARCH=${PETSC_ARCH}-real -PETSC_VERSION_NUMBER=$( echo ${PETSC_VERSION} | sed "s/\.//g" ) -SONAME=__PETSC_SONAME_VERSION__ - -PETSC_DIR_REAL=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_REAL_ARCH} - -# Make alternatives links -if [ "$1" = "configure" ]; then - -# alternative petsc for this soname (e.g. real or complex) -update-alternatives --install /usr/lib/petscdir/${SONAME} petsc${SONAME} ${PETSC_DIR_REAL} ${PETSC_VERSION_NUMBER}77 - -# alternative real petsc for this soname -update-alternatives --install /usr/lib/petscdir/${SONAME}-real petsc${SONAME}-real ${PETSC_DIR_REAL} ${PETSC_VERSION_NUMBER}77 - -fi - - -#DEBHELPER# diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.prerm petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.prerm --- petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.prerm 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc3.7-dev.prerm 1970-01-01 08:00:00.000000000 +0800 @@ -1,18 +0,0 @@ -#!/bin/sh -e - -DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ - -PETSC_VERSION=__PETSC_VERSION__ -PETSC_ARCH=${DEB_HOST_MULTIARCH} -PETSC_REAL_ARCH=${PETSC_ARCH}-real -SONAME=__PETSC_SONAME_VERSION__ - -PETSC_DIR_REAL=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_REAL_ARCH} - -# Remove alternatives links -if [ "$1" = "remove" ]; then - update-alternatives --remove petsc${SONAME} ${PETSC_DIR_REAL} - update-alternatives --remove petsc${SONAME}-real ${PETSC_DIR_REAL} -fi - -#DEBHELPER# diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.postinst petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.postinst --- petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.postinst 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.postinst 2017-02-06 05:03:51.000000000 +0800 @@ -2,6 +2,8 @@ DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ +SONAME=__PETSC_SONAME_VERSION__ + PETSC_VERSION=__PETSC_VERSION__ PETSC_ARCH=${DEB_HOST_MULTIARCH} PETSC_COMPLEX_ARCH=${PETSC_ARCH}-complex @@ -36,6 +38,12 @@ # alternative base version of petsc complex update-alternatives --install /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_complex.so libpetsc_complex.so /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_complex.so.${PETSC_VERSION} ${PETSC_VERSION_NUMBER}73 +# alternative petsc for this X.Y soname (e.g. real or complex) +update-alternatives --install /usr/lib/petscdir/${SONAME} petsc${SONAME} ${PETSC_DIR_COMPLEX} ${PETSC_VERSION_NUMBER}73 + +# alternative complex petsc for this X.Y soname +update-alternatives --install /usr/lib/petscdir/${SONAME}-complex petsc${SONAME}-complex ${PETSC_DIR_COMPLEX} ${PETSC_VERSION_NUMBER}73 + fi diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.prerm petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.prerm --- petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.prerm 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7.5-dev.prerm 2017-02-06 05:03:51.000000000 +0800 @@ -2,14 +2,21 @@ DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ +SONAME=__PETSC_SONAME_VERSION__ + PETSC_VERSION=__PETSC_VERSION__ PETSC_ARCH=${DEB_HOST_MULTIARCH} PETSC_COMPLEX_ARCH=${PETSC_ARCH}-complex +PETSC_DIR_COMPLEX=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_COMPLEX_ARCH} + # Remove alternatives links if [ "$1" = "remove" ]; then update-alternatives --remove petsc /usr/lib/petscdir/${PETSC_VERSION}/${PETSC_COMPLEX_ARCH} update-alternatives --remove libpetsc_complex.so /usr/lib/${DEB_HOST_MULTIARCH}/libpetsc_complex.so.${PETSC_VERSION} + + update-alternatives --remove petsc${SONAME} ${PETSC_DIR_COMPLEX} + update-alternatives --remove petsc${SONAME}-complex ${PETSC_DIR_COMPLEX} fi #DEBHELPER# diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.postinst petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.postinst --- petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.postinst 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.postinst 1970-01-01 08:00:00.000000000 +0800 @@ -1,25 +0,0 @@ -#!/bin/sh -e - -DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ - -PETSC_VERSION=__PETSC_VERSION__ -PETSC_ARCH=${DEB_HOST_MULTIARCH} -PETSC_COMPLEX_ARCH=${PETSC_ARCH}-complex -PETSC_VERSION_NUMBER=$( echo ${PETSC_VERSION} | sed "s/\.//g" ) -SONAME=__PETSC_SONAME_VERSION__ - -PETSC_DIR_COMPLEX=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_COMPLEX_ARCH} - -# Make alternatives links -if [ "$1" = "configure" ]; then - -# alternative petsc for this soname (e.g. real or complex) -update-alternatives --install /usr/lib/petscdir/${SONAME} petsc${SONAME} ${PETSC_DIR_COMPLEX} ${PETSC_VERSION_NUMBER}73 - -# alternative complex petsc for this soname -update-alternatives --install /usr/lib/petscdir/${SONAME}-complex petsc${SONAME}-complex ${PETSC_DIR_COMPLEX} ${PETSC_VERSION_NUMBER}73 - -fi - - -#DEBHELPER# diff -Nru petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.prerm petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.prerm --- petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.prerm 2017-01-22 12:13:55.000000000 +0800 +++ petsc-3.7.5+dfsg1/debian/libpetsc-complex-3.7-dev.prerm 1970-01-01 08:00:00.000000000 +0800 @@ -1,18 +0,0 @@ -#!/bin/sh -e - -DEB_HOST_MULTIARCH=__DEB_HOST_MULTIARCH__ - -PETSC_VERSION=__PETSC_VERSION__ -PETSC_ARCH=${DEB_HOST_MULTIARCH} -PETSC_COMPLEX_ARCH=${PETSC_ARCH}-complex -SONAME=__PETSC_SONAME_VERSION__ - -PETSC_DIR_COMPLEX=/usr/lib/petscdir/${PETSC_VERSION}/${PETSC_COMPLEX_ARCH} - -# Remove alternatives links -if [ "$1" = "remove" ]; then - update-alternatives --remove petsc${SONAME} ${PETSC_DIR_COMPLEX} - update-alternatives --remove petsc${SONAME}-complex ${PETSC_DIR_COMPLEX} -fi - -#DEBHELPER#