Source: snakemake Version: 3.10.0-1 Severity: serious Tags: buster sid https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/snakemake.html
... ====================================================================== ERROR: Failure: Exception (snakemake not in PATH. For testing, install snakemake with 'pip install -e .'. You should do this in a separate environment (via conda or virtualenv).) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/usr/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/build/1st/snakemake-3.10.0/.pybuild/pythonX.Y_3.6/build/tests/tests.py", line 21, in <module> raise Exception("snakemake not in PATH. For testing, install snakemake with " Exception: snakemake not in PATH. For testing, install snakemake with 'pip install -e .'. You should do this in a separate environment (via conda or virtualenv). ---------------------------------------------------------------------- Ran 4 tests in 0.535s FAILED (errors=1) E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd /build/1st/snakemake-3.10.0/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose tests dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned exit code 13 debian/rules:18: recipe for target 'build' failed make: *** [build] Error 25 The problem is the the following line in debian/rules: export PATH:=$(CURDIR)/.pybuild/pythonX.Y_3.5/build/bin:$(PATH)