> ... > # Failed test 'bowtie success' > # at t/Bowtie.t line 188. > # '# reads processed: 2000 > # # reads with at least one reported alignment: 2000 (100.00%) > # # reads that failed to align: 0 (0.00%) > # Reported 1000 paired-end alignments to 1 output stream(s) > # ' > # doesn't match '(?^:reads processed: 1000)' > > # Failed test 'bowtie success' > # at t/Bowtie.t line 195. > # '# reads processed: 2000 > # # reads with at least one reported alignment: 2000 (100.00%) > # # reads that failed to align: 0 (0.00%) > # Reported 1000 paired-end alignments to 1 output stream(s) > # ' > # doesn't match '(?^:reads processed: 1000)' > # Looks like you failed 2 tests of 61. > t/Bowtie.t ..................... > ... > > > I suspect that some change between bowtie 1.2.0 and bowtie 1.2.1.1 is > responsible for the issue in bioperl-run. I wonder whether tracking > down this issue sounds interesting for somebody who knows (and uses) > bowtie a bit. > > Kind regards > > Andreas. >
Hi Andreas, That's a trivial one, s/reads processed: 1000/reads processed: 2000/ I'll take care. Best regards, Alex