Source: primer3 Version: 2.4.0-1 Severity: serious https://buildd.debian.org/status/package.php?p=primer3&suite=sid
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TESTING primer3_core Different number of lines [FAILED] make[2]: *** [Makefile:82: testmasker] Error 255 make[2]: *** Waiting for unfinished jobs.... mkdir: ../test/primer_list_tmp mkdir: ../test/primer1_list_tmp mkdir: ../test/primer1_th_list_tmp mkdir: ../test/th-w-other-tasks_list_tmp p3test.pl for primer3_core version 2.4.0 p3test.pl: testing ../src/primer3_core START, Wed Feb 21 09:45:45 2018 testing fatal errors... ./primer_global_err/bad_divalent_dntp_conc_1 Testing --output and --error flags on ../src/primer3_core --strict_tags ./primer_global_err/bad_divalent_dntp_conc_1.in --output ./primer_global_err/bad_divalent_dntp_conc_1.tmp --error ./primer_global_err/bad_divalent_dntp_conc_1.tmp2 ./primer_global_err/bad_divalent_dntp_conc_2 ./primer_global_err/bad_divalent_dntp_conc_3 ./primer_global_err/bad_divalent_dntp_conc_4 ./primer_global_err/bad_dna_conc ./primer_global_err/bad_first_base_index ./primer_global_err/bad_float_1 ./primer_global_err/bad_float_2 ./primer_global_err/bad_float_3 ./primer_global_err/bad_float_4 ./primer_global_err/bad_gc_1 ./primer_global_err/bad_gc_2 ./primer_global_err/bad_gc_3 ./primer_global_err/bad_gc_int_1 ./primer_global_err/bad_gc_int_2 ./primer_global_err/bad_gc_int_3 ./primer_global_err/bad_min_three_prime_distance ./primer_global_err/bad_num_ns ./primer_global_err/bad_num_ns_int ./primer_global_err/bad_product_sizes_1 ./primer_global_err/bad_product_sizes_2 ./primer_global_err/bad_product_sizes_3 ./primer_global_err/bad_product_sizes_4 ./primer_global_err/bad_salt_conc ./primer_global_err/bad_self_any ./primer_global_err/bad_self_any_int ./primer_global_err/bad_self_end ./primer_global_err/bad_self_end_int ./primer_global_err/bad_settings0 ./primer_global_err/bad_settings1 ./primer_global_err/bad_settings2 ./primer_global_err/bad_settings3 ./primer_global_err/bad_settings4 ./primer_global_err/bad_settings5 ./primer_global_err/bad_settings6 ./primer_global_err/empty_1 ./primer_global_err/empty_product_size ./primer_global_err/gc_clamp_min_size ./primer_global_err/incorrect_task ./primer_global_err/io_gc_content_obj_fn ./primer_global_err/io_obj_fn ./primer_global_err/junction_overlap_max_size ./primer_global_err/junction_overlap_min_size ./primer_global_err/max_min_tm ./primer_global_err/max_min_tm_int ./primer_global_err/max_opt_tm ./primer_global_err/max_opt_tm_int ./primer_global_err/MAX_PRIMER_LENGTH ./primer_global_err/max_size_limit_int ./primer_global_err/max_size_min_product ./primer_global_err/max_size_min_product_int ./primer_global_err/min_opt_tm ./primer_global_err/min_opt_tm_int ./primer_global_err/mishyb_obj_fn ./primer_global_err/mispr_obj_fn ./primer_global_err/must_match_length_0 ./primer_global_err/must_match_length_1 ./primer_global_err/must_match_length_10 ./primer_global_err/must_match_length_2 ./primer_global_err/must_match_length_3 ./primer_global_err/must_match_length_4 ./primer_global_err/must_match_length_5 ./primer_global_err/must_match_length_6 ./primer_global_err/must_match_length_7 ./primer_global_err/must_match_length_8 ./primer_global_err/must_match_length_9 ./primer_global_err/no_equal ./primer_global_err/no_terminal_equal ./primer_global_err/opt_max_size ./primer_global_err/opt_max_size_int ./primer_global_err/opt_min_size ./primer_global_err/opt_min_size_int ./primer_global_err/pair_mispr ./primer_global_err/pr_gc_content_obj_fn ./primer_global_err/product_size_obj_fn ./primer_global_err/product_tm_obj_fn ./primer_global_err/repeat_lib_err ./primer_global_err/repeat_lib_err1 ./primer_global_err/repeat_lib_err2 ./primer_global_err/repeat_lib_err3 ./primer_global_err/repeat_lib_err4 ./primer_global_err/repeat_lib_err5 ./primer_global_err/repeat_lib_err6 ./primer_global_err/repeat_lib_int_err ./primer_global_err/repeat_lib_int_err1 ./primer_global_err/repeat_lib_int_err2 ./primer_global_err/repeat_lib_int_err3 ./primer_global_err/repeat_lib_int_err4 ./primer_global_err/repeat_lib_int_err5 ./primer_global_err/repeat_lib_int_err6 ./primer_global_err/seq_quality1 ./primer_global_err/seq_quality2 ./primer_global_err/seq_quality3 ./primer_global_err/seq_quality4 ./primer_global_err/too_many_product_sizes ./primer_global_err/zero_min_size ./primer_global_err/zero_num_return [OK] primer_must_use_th...0s [OK] primer_task_th...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 1...[OK] Default implementations + NO alignment 2...[OK] Force _dpal_generic...5s [OK] primer_thal_args...[OK] Force _dpal_long_nopath_generic 1...2s [OK] primer_thal_max_seq_error...[OK] Default implementations + NO alignment 2...2s [OK] primer_first_base_index...[OK] Force _dpal_long_nopath_generic 2...0s [OK] primer_must_match...[OK] Force long maxgap1 functions 1...0s [OK] primer_masker...../src/primer3_core: Given file is not a list file: ../kmer_lists/homo_sapiens_11.list; Given file is not a list file: ../kmer_lists/homo_sapiens_16.list NON-0 EXIT: 252 [FAILED] primer_masker_formatted...../src/primer3_core: Given file is not a list file: ../kmer_lists/homo_sapiens_11.list; Given file is not a list file: ../kmer_lists/homo_sapiens_16.list NON-0 EXIT: 252 [FAILED] test_compl_error...0s [OK] test_left_to_right_of_right...0s [OK] dv_conc_vs_dntp_conc...0s [OK] primer_boundary...0s [OK] primer_boundary1...0s [OK] primer_boundary_formatted...0s [OK] primer_boundary1_formatted...1s [OK] primer3_v1_1_4_default_settings...0s [OK] primer3web_v0_4_0_default_settings...[OK] 0s [OK] primer3web_v3_0_0_default_settings...[OK] Force long maxgap1 functions 2...[OK] 9s [OK] primer3web_v4_0_0_default_settings...0s [OK] primer_internal...0s [OK] primer_internal1...0s [OK] primer_internal_formatted...0s [OK] primer_internal1_formatted...1s [OK] primer_ok_regions...0s [OK] primer_ok_regions_formatted...0s [OK] primer_ok_regions2...61s [OK] primer_tm_lc_masking...0s [OK] primer_tm_lc_masking_formatted...0s [OK] primer_start_codon...2s [OK] primer_task...0s [OK] primer_task_formatted...0s [OK] primer_renewed_tasks...0s [OK] primer_new_tasks...1s [OK] primer_new_tasks_formatted...1s [OK] primer_must_overlap_point...7s [OK] primer_overlap_junction...0s [OK] primer_all_settingsfiles...0s [OK] primer_high_tm_load_set...0s [OK] primer_high_gc_load_set...0s [OK] primer_gc_end...0s [OK] primer_check...1s [OK] primer_must_use...0s [OK] primer_must_use_formatted...0s [OK] primer_syntax...0s [OK] primer_end_pathology...0s [OK] primer_num_best...0s [OK] primer_quality_boundary...0s [OK] primer...4s [OK] primer_list_files...[OK] primer1...1s [OK] primer1_list_files...[OK] primer_mispriming...2s [OK] primer_mispriming_formatted...2s [OK] primer_mispriming_boundary1...1s [OK] primer_mispriming_boundary1_formatted...0s [OK] primer_mispriming_boundary2...0s [OK] primer_mispriming_boundary2_formatted...0s [OK] primer_mispriming_long_lib...0s [OK] primer_rat...2s [OK] primer_human...5s [OK] long_seq...1s [OK] primer_position_penalty...4s [OK] primer_position_penalty_formatted...4s [OK] p3-tmpl-mispriming...0s [OK] primer_three_prime_distance...0s [OK] primer_obj_fn...10s [OK] p3_3_prime_n...0s [OK] primer_masker...../src/primer3_core: Given file is not a list file: ../kmer_lists/homo_sapiens_11.list; Given file is not a list file: ../kmer_lists/homo_sapiens_16.list NON-0 EXIT: 252 [FAILED] primer_masker_formatted...../src/primer3_core: Given file is not a list file: ../kmer_lists/homo_sapiens_11.list; Given file is not a list file: ../kmer_lists/homo_sapiens_16.list NON-0 EXIT: 252 [FAILED] primer_mispriming_th...55s [OK] th-w-other-tasks...67s [OK] th-w-other-tasks_list_files...[OK] primer_new_tasks_th...101s [OK] primer_thermod_align...240s [OK] primer_thermod_align_formatted...239s [OK] primer1_th...727s [OK] primer1_th_list_files...[OK] primer_lib_amb_codes... NOTE: this test takes _much_ longer than the others (5 to 20 minutes or more). starting primer_lib_amb_codes at Wed Feb 21 10:11:46 2018...1939s [OK] Tests in p3test.pl ran for 3500 s (58.3333333333333 min) DONE Wed Feb 21 10:44:05 2018 At least one test failed - [FAILED] make[2]: Leaving directory '/<<PKGBUILDDIR>>/test' dh_auto_test: cd test && make -j4 test returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_test] Error 2