Source: seqan2 Version: 2.4.0+dfsg-8 Severity: normal Tags: upstream User: debian-sp...@lists.debian.org Usertags: sparc64
Builds of seqan2 for sparc64 (admittedly not a release architecture) have been failing lately, per the below excerpt from [1]. The tests that "Failed" generally if not always returned -10, presumably corresponding to having encountered SIGBUS (10 on this architecture) -- no surprise, since sparc64 is notoriously strict about memory access alignment. Could you please take a look? Thanks! [1] https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=sparc64&ver=2.4.0%2Bdfsg-8&stamp=1519554692&raw=0 ---------------------------------------------------------------------- 90% tests passed, 39 tests failed out of 403 Total Test time (real) = 324.89 sec The following tests FAILED: 15 - test_test_bam_io (SEGFAULT) 43 - test_test_index_creation (SEGFAULT) 44 - test_test_index_crosscompare_char (SEGFAULT) 46 - test_test_index_crosscompare_dna (SEGFAULT) 52 - test_test_index_fm_rank_dictionary (SEGFAULT) 54 - test_test_index_base (SEGFAULT) 55 - test_test_index_fm (SEGFAULT) 56 - test_test_index_bifm (SEGFAULT) 57 - test_test_index_vstree (SEGFAULT) 58 - test_test_index_stree_iterators (SEGFAULT) 60 - test_test_index_finder (SEGFAULT) 79 - test_reduced_aminoacid (SEGFAULT) 93 - test_test_seq_io (SEGFAULT) 101 - test_test_store (SEGFAULT) 102 - test_test_stream (SEGFAULT) 104 - test_test_tabix_io (SEGFAULT) 119 - test_demo_dox_find_finder_index (Failed) 138 - test_demo_dox_index_getOccurrences_getFrequency_range_getFibre (Failed) 141 - test_demo_dox_index_length_countSequences (Failed) 143 - test_demo_dox_index_open_save (Failed) 204 - test_demo_tutorial_file_io_overview_example1 (Failed) 205 - test_demo_tutorial_file_io_overview_solution1 (Failed) 206 - test_demo_tutorial_file_io_overview_solution2 (Failed) 207 - test_demo_tutorial_file_io_overview_solution3 (Failed) 230 - test_demo_tutorial_index_iterators_index_assignment1 (Failed) 231 - test_demo_tutorial_index_iterators_index_assignment2 (Failed) 232 - test_demo_tutorial_index_iterators_index_bidirectional_search (Failed) 238 - test_demo_tutorial_index_iterators_iterator_solution1 (Failed) 246 - test_demo_tutorial_indices_base (Failed) 304 - test_demo_tutorial_pattern_matching_find_index_multiple (Failed) 314 - test_demo_tutorial_sam_and_bam_io_example7 (Failed) 378 - app_test_bs_tools (Failed) 383 - app_test_mason2 (Failed) 385 - app_test_ngs_roi (Failed) 388 - app_test_rabema (Failed) 390 - app_test_razers3 (Failed) 391 - app_test_razers3_sequential (Failed) 394 - app_test_samcat (Failed) 397 - app_test_seqcons2 (Failed) Errors while running CTest -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu