Source: blasr Version: 5.3+0-1 Severity: normal Tags: patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512
Hi, Please find attached a patch to support HDF5 1.10.1 currently in experimental. Thanks in advance, _g. - -- System Information: Distributor ID: PureOS Description: PureOS GNU/Linux 8 Release: 8 Codename: green Architecture: x86_64 Kernel: Linux 4.14.0-3-amd64 (SMP w/4 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages blasr depends on: ii libc6 2.26-6 ii libgcc1 1:7.2.0-14 ii libhdf5-100 1.10.0-patch1+docs-4 pn libhdf5-cpp-100 <none> pn libhts2 <none> pn libpbbam <none> pn libpbseq <none> ii libstdc++6 7.2.0-14 ii zlib1g 1:1.2.8.dfsg-5 blasr recommends no packages. blasr suggests no packages. -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlqlTT0ACgkQ7+hsbH/+ z4OC0Af/QS/iakwI7G7m+MhzCgTn/IH5KK0YXAM7G8Nqd7t0GXeT9tShvINmFzN8 q1r30dZJlDF+72HUitaJz04sNuTnjGEsJlPzBbBn2uxh8cBWeLR9N3arjYBa5YSZ /jNfOJFQFhfUMkBuobjRRKioc6d91n3uaewQ1bWVF6oS/osFEGGIjiSEzze5sIyy CitNq5N/p5ZGGVXA4S4w5faAIl79oCzOLXl4/BDxzkX4cRZQDT30DoEwRYuch1EY KRAwuWHPowNORsBXeymiqci7ep0z+3mJtrj/SzNUtUsQVGVlLQcZj0aNjqY+waMg LspGvTSD/gBZaH1Fnv2cvHWQN8PICA== =k8wg -----END PGP SIGNATURE-----
diff -Nru blasr-5.3+0/debian/changelog blasr-5.3+0/debian/changelog --- blasr-5.3+0/debian/changelog 2016-12-24 02:50:11.000000000 +0100 +++ blasr-5.3+0/debian/changelog 2018-03-09 14:44:37.000000000 +0100 @@ -1,3 +1,10 @@ +blasr (5.3+0-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Support for HDF5 1.10.1 + + -- Gilles Filippini <[email protected]> Fri, 09 Mar 2018 14:44:37 +0100 + blasr (5.3+0-1) unstable; urgency=medium * Imported Upstream version 5.3+0 (corresponds to smrtanalysis-4.0.0 tag) diff -Nru blasr-5.3+0/debian/rules blasr-5.3+0/debian/rules --- blasr-5.3+0/debian/rules 2016-12-20 11:01:23.000000000 +0100 +++ blasr-5.3+0/debian/rules 2018-03-09 14:44:24.000000000 +0100 @@ -20,6 +20,12 @@ export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) +# Needed for HDF5 1.10.1 support +HDF5_VERSION := $(shell grep 'HDF5 Version' $(HDF5_LIB)/libhdf5.settings | awk '{print $$3}') +ifeq (yes,$(shell dpkg --compare-versions $(HDF5_VERSION) '>=' 1.10.1 && echo yes)) +export DEB_CXXFLAGS_MAINT_APPEND=-DHAVE_HDF5_1_10_1 +endif + # CPPFLAGS apparently aren't exported for bam2bax/bax2bam export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR)
