On 5 April 2018 at 05:36, Ben Goodrich wrote: | Package: r-cran-matrix | Version: 1.2-13-1 | Severity: normal | | Hi Dirk, | | When I install r-cran-matrix version 1.2-13-1 from unstable, it puts it under /usr/lib/R/site-library ,
I am aware. I switched to the newer/better build system dh-r, and it had a bug that it did not recognise 'Priority: recommended' (as it was case sensitive by oversight). This has been fixed in a new release 20180404 (see eg [1]) so I need to rebuild. [1] http://metadata.ftp-master.debian.org/changelogs/main/d/dh-r/dh-r_20180403_changelog) | whereas if I downgrade to version 1.2-12-1 from testing, it puts it under /usr/lib/R/library with the | other recommended packages. I am not sure if this was an intentional change, but it breaks R CMD check | for packages that have Matrix in the Imports line of their DESCRIPTION file. Specifically, if you call | R CMD check on a package that is downstream of Matrix, then when it gets to examples or tests, it says: | | Error: package or namespace load failed for 'rstanarm' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): | there is no package called 'Matrix' That is weird and I don't understand. Still in .libPaths(). | I put in a print statement right before that, which outputs | | > library(testthat) | > print(.libPaths()) | [1] "/tmp/RtmpKN7neI/RLIBS_8051142d41b" "/usr/lib/R/library" | > library(rstanarm) | | so it seems that R CMD check does not copy Matrix into /tmp/Rtmp* because it assumes it is already in | /usr/lib/R/library, which is not the case anymore. Good thinking. | Not a big deal since I have to do R CMD check on r-devel anyway. But I'll fix. Also affects r-cran-cluster. Uploading ... Dirk | Thanks, | Ben | | -- System Information: | Debian Release: buster/sid | APT prefers unstable | APT policy: (500, 'unstable'), (500, 'testing') | Architecture: amd64 (x86_64) | Foreign Architectures: i386 | | Kernel: Linux 3.17-4.towo-siduction-amd64 (SMP w/8 CPU cores; PREEMPT) | Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE= (charmap=UTF-8) | Shell: /bin/sh linked to /bin/dash | Init: systemd (via /run/systemd/system) | | Versions of packages r-cran-matrix depends on: | ii libatlas3-base [liblapack.so.3] 3.10.3-5 | ii libblas3 [libblas.so.3] 3.7.1-4 | ii libc6 2.27-3 | ii libgcc1 1:8-20180402-1 | ii libgfortran4 7.3.0-14 | ii liblapack3 [liblapack.so.3] 3.7.1-4 | ii libopenblas-base [liblapack.so.3] 0.2.20+ds-4 | ii libquadmath0 8-20180402-1 | ii libstdc++6 8-20180402-1 | ii r-cran-lattice 0.20-35-1+b1 | | r-cran-matrix recommends no packages. | | r-cran-matrix suggests no packages. | | -- no debconf information -- http://dirk.eddelbuettel.com | @eddelbuettel | [email protected]
