I am away right now and can't investigate before two weeks. Looks Cython related from a first look.
Ghis Le ven. 29 juin 2018 à 11:17, Andreas Tille <andr...@fam-tille.de> a écrit : > Hi Ghislain, > > since one of the Debian Med packages seems to be affected I tried to > upgrade h5py (see Git repository). Unfortunately it does not build: > > ... > running build_ext > Traceback (most recent call last): > File "setup.py", line 168, in <module> > cmdclass = CMDCLASS, > File "/usr/lib/python2.7/dist-packages/setuptools/__init__.py", line > 129, in setup > return distutils.core.setup(**attrs) > File "/usr/lib/python2.7/distutils/core.py", line 151, in setup > dist.run_commands() > File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands > self.run_command(cmd) > File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command > cmd_obj.run() > File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run > self.run_command(cmd_name) > File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command > self.distribution.run_command(command) > File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command > cmd_obj.run() > File "/build/h5py-2.8.0/setup_build.py", line 156, in run > from Cython.Build import cythonize > File "/usr/lib/python2.7/dist-packages/Cython/Build/__init__.py", line > 1, in <module> > from .Dependencies import cythonize > File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", > line 36, in <module> > from ..Compiler.Main import Context, CompilationOptions, > default_options > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py", line > 30, in <module> > from .Symtab import ModuleScope > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Symtab.py", line > 19, in <module> > from . import PyrexTypes > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/PyrexTypes.py", > line 17, in <module> > from .Code import UtilityCode, LazyUtilityCode, TempitaUtilityCode > File "Cython/Compiler/Code.py", line 38, in init Cython.Compiler.Code > ImportError: /usr/lib/python2.7/dist-packages/Cython/ > StringIOTree.x86_64-linux-gnu.so: undefined symbol: Py_InitModule4_64 > E: pybuild pybuild:336: build: plugin distutils failed with: exit code=1: > /usr/bin/python-dbg setup.py build > dh_auto_build: pybuild --build -i python{version}-dbg -p 2.7 returned exit > code 13 > make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25 > make[1]: Leaving directory '/build/h5py-2.8.0' > make: *** [debian/rules:10: build] Error 2 > dpkg-buildpackage: error: debian/rules build gave error exit status 2 > > > Can you please have a look? > > Kind regards > > Andreas. > > -- > http://fam-tille.de >