Hi James, when I add this patch I get a failure of the test suite on amd64. Should I sent a full build log or are you able to reproduce the issue?
Kind regards Andreas. On Fri, Dec 07, 2018 at 11:30:46AM +0000, James Bonfield wrote: > On Tue, Dec 04, 2018 at 07:55:14AM +0100, Andreas Tille wrote: > > > === testing ./data/xx#unsorted.sam === > > > ./scram.test: 27: [: ./data/xx#unsorted.sam: unexpected operator > > > ../progs/scramble -t4 ./data/xx#unsorted.sam test.out/xx#unsorted.sam > > > ../progs/scramble -t4 -r ./data/xx.fa ./data/xx#unsorted.sam > > > test.out/xx#unsorted.full.cram > > > scramble: cram_codecs.c:1441: cram_huffman_encode_init: Assertion > > > `hi->data.i > 0' failed. > > > Aborted > > > FAIL scram_mt.test (exit status: 1) > > Rob Davies figured this one out and it's fixed upstream in commit > 242cd6b. > > The bug affected 32-bit systems, leading to uninitialised memory > accesses in the hash table code. > > I'm hoping this covers all the recently detected io_lib bugs. (This > isn't a recent bug - it's been there for years!) > > James > > -- > James Bonfield (j...@sanger.ac.uk) > The Sanger Institute, Hinxton, Cambs, CB10 1SA > > > -- > The Wellcome Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > -- http://fam-tille.de