Source: libbiod Version: 0.2.1-1 Severity: serious Justification: FTBFS on amd64 Tags: buster sid Usertags: ftbfs-20181229 ftbfs-buster
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dpkg-query: no packages found matching gdc > dh build > dh_update_autotools_config > dh_autoreconf > dh_auto_configure > cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. > --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc > --localstatedir=/var --libdir=lib/x86_64-linux-gnu > --libexecdir=lib/x86_64-linux-gnu > The Meson build system > Version: 0.49.0 > Source dir: /<<PKGBUILDDIR>> > Build dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu > Build type: native build > Project name: BioD > Project version: 0.2.2 > Appending DFLAGS from environment: '-O -g -release -wi' > Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' > Native D compiler: ldc2 (llvm 1.12.0 "LDC - the LLVM D compiler (1.12.0):") > Build machine cpu family: x86_64 > Build machine cpu: x86_64 > Found pkg-config: /usr/bin/pkg-config (0.29) > Dependency undead found: YES 1.0.7 > Dependency zlib found: YES 1.2.11 > Build targets in project: 2 > Found ninja-1.8.2 at /usr/bin/ninja > dh_auto_build > cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j2 -v > [1/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_bai_bin.d.o' -c > ../bio/bam/bai/bin.d > [2/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_abstractreader.d.o' -c ../bio/bam/abstractreader.d > [3/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_baifile.d.o' -c > ../bio/bam/baifile.d > [4/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_baseinfo.d.o' -c > ../bio/bam/baseinfo.d > [5/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_cigar.d.o' -c > ../bio/bam/cigar.d > [6/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_constants.d.o' -c > ../bio/bam/constants.d > [7/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_bai_indexing.d.o' > -c ../bio/bam/bai/indexing.d > [8/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_iontorrent_flowindex.d.o' -c > ../bio/bam/iontorrent/flowindex.d > [9/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_md_core.d.o' -c > ../bio/bam/md/core.d > [10/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_iontorrent_flowcall.d.o' -c > ../bio/bam/iontorrent/flowcall.d > [11/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_md_operation.d.o' > -c ../bio/bam/md/operation.d > [12/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_md_reconstruct.d.o' -c ../bio/bam/md/reconstruct.d > [13/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_md_parse.d.o' -c > ../bio/bam/md/parse.d > [14/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_pileup.d.o' -c > ../bio/bam/pileup.d > [15/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_randomaccessmanager.d.o' -c > ../bio/bam/randomaccessmanager.d > [16/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_multireader.d.o' > -c ../bio/bam/multireader.d > [17/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_read.d.o' -c > ../bio/bam/read.d > [18/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_readrange.d.o' -c > ../bio/bam/readrange.d > [19/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_reader.d.o' -c > ../bio/bam/reader.d > [20/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_referenceinfo.d.o' > -c ../bio/bam/referenceinfo.d > [21/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_region.d.o' -c > ../bio/bam/region.d > [22/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_reference.d.o' -c > ../bio/bam/reference.d > [23/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_snpcallers_simple.d.o' -c ../bio/bam/snpcallers/simple.d > [24/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_snpcallers_maq.d.o' -c ../bio/bam/snpcallers/maq.d > [25/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_splitter.d.o' -c > ../bio/bam/splitter.d > [26/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_thirdparty_msgpack.d.o' -c > ../bio/bam/thirdparty/msgpack.d > [27/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_utils_array.d.o' > -c ../bio/bam/utils/array.d > [28/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_utils_graph.d.o' > -c ../bio/bam/utils/graph.d > [29/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_tagvalue.d.o' -c > ../bio/bam/tagvalue.d > [30/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_utils_value.d.o' > -c ../bio/bam/utils/value.d > [31/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_utils_samheadermerger.d.o' -c > ../bio/bam/utils/samheadermerger.d > [32/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_validation_samheader.d.o' -c > ../bio/bam/validation/samheader.d > [33/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_bam_writer.d.o' -c > ../bio/bam/writer.d > [34/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_base.d.o' -c > ../bio/core/base.d > [35/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_bgzf_block.d.o' > -c ../bio/core/bgzf/block.d > [36/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_bgzf_chunk.d.o' > -c ../bio/core/bgzf/chunk.d > [37/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_bgzf_compress.d.o' -c ../bio/core/bgzf/compress.d > [38/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_bgzf_constants.d.o' -c ../bio/core/bgzf/constants.d > [39/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_logger.d.o' -c > ../bio2/logger.d > [40/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_bgzf_inputstream.d.o' -c ../bio/core/bgzf/inputstream.d > [41/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_bam_validation_alignment.d.o' -c > ../bio/bam/validation/alignment.d > [42/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_bgzf_virtualoffset.d.o' -c > ../bio/core/bgzf/virtualoffset.d > [43/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_bgzf_outputstream.d.o' -c > ../bio/core/bgzf/outputstream.d > [44/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_call.d.o' -c > ../bio/core/call.d > [45/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_fastq.d.o' -c > ../bio/core/fastq.d > [46/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_genotype.d.o' -c > ../bio/core/genotype.d > [47/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_fasta.d.o' -c > ../bio/core/fasta.d > [48/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_kmer.d.o' -c > ../bio/core/kmer.d > [49/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_region.d.o' -c > ../bio/core/region.d > [50/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_tinymap.d.o' -c > ../bio/core/tinymap.d > [51/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_utils_algo.d.o' > -c ../bio/core/utils/algo.d > [52/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_sequence.d.o' -c > ../bio/core/sequence.d > [53/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_exception.d.o' -c ../bio/core/utils/exception.d > [54/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_utils_format.d.o' > -c ../bio/core/utils/format.d > [55/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_memoize.d.o' -c ../bio/core/utils/memoize.d > [56/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_bylinefast.d.o' -c ../bio/core/utils/bylinefast.d > [57/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_outbuffer.d.o' -c ../bio/core/utils/outbuffer.d > [58/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_utils_range.d.o' > -c ../bio/core/utils/range.d > [59/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_roundbuf.d.o' -c ../bio/core/utils/roundbuf.d > [60/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_switchendianness.d.o' -c > ../bio/core/utils/switchendianness.d > [61/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_utils_stream.d.o' > -c ../bio/core/utils/stream.d > [62/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_core_utils_tmpfile.d.o' -c ../bio/core/utils/tmpfile.d > [63/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_core_utils_zlib.d.o' > -c ../bio/core/utils/zlib.d > [64/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_maf_block.d.o' -c > ../bio/maf/block.d > [65/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_maf_reader.d.o' -c > ../bio/maf/reader.d > [66/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_maf_parser.d.o' -c > ../bio/maf/parser.d > [67/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sam_reader.d.o' -c > ../bio/sam/reader.d > [68/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sam_header.d.o' -c > ../bio/sam/header.d > [69/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_sam_utils_recordparser.d.o' -c > ../bio/sam/utils/recordparser.d > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(52): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(60): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(69): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(77): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(83): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(132): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(164): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(177): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(189): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(222): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(252): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > sam_alignment.rl(409): Warning: statement is not reachable > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > [70/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_constants.d.o' -c > ../bio/sff/constants.d > [71/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_index.d.o' -c > ../bio/sff/index.d > [72/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_read.d.o' -c > ../bio/sff/read.d > [73/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic > -of='biod@sha/bio_sam_utils_fastrecordparser.d.o' -c > ../bio/sam/utils/fastrecordparser.d > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > sam_alignment.rl(52): Warning: statement is not reachable > sam_alignment.rl(60): Warning: statement is not reachable > sam_alignment.rl(69): Warning: statement is not reachable > sam_alignment.rl(77): Warning: statement is not reachable > sam_alignment.rl(83): Warning: statement is not reachable > sam_alignment.rl(132): Warning: statement is not reachable > sam_alignment.rl(164): Warning: statement is not reachable > sam_alignment.rl(177): Warning: statement is not reachable > sam_alignment.rl(189): Warning: statement is not reachable > sam_alignment.rl(222): Warning: statement is not reachable > sam_alignment.rl(252): Warning: statement is not reachable > sam_alignment.rl(409): Warning: statement is not reachable > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > [74/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_reader.d.o' -c > ../bio/sff/reader.d > [75/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_readrange.d.o' -c > ../bio/sff/readrange.d > [76/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_utils_roundup.d.o' > -c ../bio/sff/utils/roundup.d > [77/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio_sff_writer.d.o' -c > ../bio/sff/writer.d > [78/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_bam_header.d.o' -c > ../bio2/bam/header.d > [79/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_bam_writer.d.o' -c > ../bio2/bam/writer.d > [80/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_bam_reader.d.o' -c > ../bio2/bam/reader.d > [81/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_bgzf.d.o' -c > ../bio2/bgzf.d > [82/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_constants.d.o' -c > ../bio2/constants.d > [83/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_hashing.d.o' -c > ../bio2/hashing.d > [84/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_pileup.d.o' -c > ../bio2/pileup.d > [85/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_reads.d.o' -c > ../bio2/reads.d > [86/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_bgzf_writer.d.o' -c > ../bio2/bgzf_writer.d > [87/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_bgzf_constants.d.o' > -c ../bio/core/bgzf/constants.d > [88/177] ldc2 -I=biod@sha -I=. -I=.. -I/usr/include/d -enable-color -O -g > -release -wi -relocation-model=pic -of='biod@sha/bio2_unpack.d.o' -c > ../bio2/unpack.d > [89/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_core_bgzf_virtualoffset.d.o' -c > ../bio/core/bgzf/virtualoffset.d > [90/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_core_bgzf_outputstream.d.o' -c > ../bio/core/bgzf/outputstream.d > [91/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_bgzf_inputstream.d.o' > -c ../bio/core/bgzf/inputstream.d > [92/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_abstractreader.d.o' -c > ../bio/bam/abstractreader.d > [93/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_bai_bin.d.o' -c > ../bio/bam/bai/bin.d > [94/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_baifile.d.o' -c > ../bio/bam/baifile.d > [95/177] ldc2 -of=libbiod.so.0.2.2 'biod@sha/bio_bam_abstractreader.d.o' > 'biod@sha/bio_bam_bai_bin.d.o' 'biod@sha/bio_bam_baifile.d.o' > 'biod@sha/bio_bam_bai_indexing.d.o' 'biod@sha/bio_bam_baseinfo.d.o' > 'biod@sha/bio_bam_cigar.d.o' 'biod@sha/bio_bam_constants.d.o' > 'biod@sha/bio_bam_iontorrent_flowcall.d.o' > 'biod@sha/bio_bam_iontorrent_flowindex.d.o' 'biod@sha/bio_bam_md_core.d.o' > 'biod@sha/bio_bam_md_operation.d.o' 'biod@sha/bio_bam_md_parse.d.o' > 'biod@sha/bio_bam_md_reconstruct.d.o' 'biod@sha/bio_bam_multireader.d.o' > 'biod@sha/bio_bam_pileup.d.o' 'biod@sha/bio_bam_randomaccessmanager.d.o' > 'biod@sha/bio_bam_read.d.o' 'biod@sha/bio_bam_reader.d.o' > 'biod@sha/bio_bam_readrange.d.o' 'biod@sha/bio_bam_reference.d.o' > 'biod@sha/bio_bam_referenceinfo.d.o' 'biod@sha/bio_bam_region.d.o' > 'biod@sha/bio_bam_snpcallers_maq.d.o' > 'biod@sha/bio_bam_snpcallers_simple.d.o' 'biod@sha/bio_bam_splitter.d.o' > 'biod@sha/bio_bam_tagvalue.d.o' 'biod@sha/bio_bam_thirdparty_msgpack.d.o' > 'biod@sha/bio_bam_utils_array.d.o' 'biod@sha/bio_bam_utils_graph.d.o' > 'biod@sha/bio_bam_utils_samheadermerger.d.o' > 'biod@sha/bio_bam_utils_value.d.o' > 'biod@sha/bio_bam_validation_alignment.d.o' > 'biod@sha/bio_bam_validation_samheader.d.o' 'biod@sha/bio_bam_writer.d.o' > 'biod@sha/bio_core_base.d.o' 'biod@sha/bio_core_bgzf_block.d.o' > 'biod@sha/bio_core_bgzf_chunk.d.o' 'biod@sha/bio_core_bgzf_compress.d.o' > 'biod@sha/bio_core_bgzf_constants.d.o' > 'biod@sha/bio_core_bgzf_inputstream.d.o' > 'biod@sha/bio_core_bgzf_outputstream.d.o' > 'biod@sha/bio_core_bgzf_virtualoffset.d.o' 'biod@sha/bio_core_call.d.o' > 'biod@sha/bio_core_fasta.d.o' 'biod@sha/bio_core_fastq.d.o' > 'biod@sha/bio_core_genotype.d.o' 'biod@sha/bio_core_kmer.d.o' > 'biod@sha/bio_core_region.d.o' 'biod@sha/bio_core_sequence.d.o' > 'biod@sha/bio_core_tinymap.d.o' 'biod@sha/bio_core_utils_algo.d.o' > 'biod@sha/bio_core_utils_bylinefast.d.o' > 'biod@sha/bio_core_utils_exception.d.o' 'biod@sha/bio_core_utils_format.d.o' > 'biod@sha/bio_core_utils_memoize.d.o' 'biod@sha/bio_core_utils_outbuffer.d.o' > 'biod@sha/bio_core_utils_range.d.o' 'biod@sha/bio_core_utils_roundbuf.d.o' > 'biod@sha/bio_core_utils_stream.d.o' > 'biod@sha/bio_core_utils_switchendianness.d.o' > 'biod@sha/bio_core_utils_tmpfile.d.o' 'biod@sha/bio_core_utils_zlib.d.o' > 'biod@sha/bio_maf_block.d.o' 'biod@sha/bio_maf_parser.d.o' > 'biod@sha/bio_maf_reader.d.o' 'biod@sha/bio_sam_header.d.o' > 'biod@sha/bio_sam_reader.d.o' 'biod@sha/bio_sam_utils_fastrecordparser.d.o' > 'biod@sha/bio_sam_utils_recordparser.d.o' 'biod@sha/bio_sff_constants.d.o' > 'biod@sha/bio_sff_index.d.o' 'biod@sha/bio_sff_read.d.o' > 'biod@sha/bio_sff_reader.d.o' 'biod@sha/bio_sff_readrange.d.o' > 'biod@sha/bio_sff_utils_roundup.d.o' 'biod@sha/bio_sff_writer.d.o' > 'biod@sha/bio2_bam_header.d.o' 'biod@sha/bio2_bam_reader.d.o' > 'biod@sha/bio2_bam_writer.d.o' 'biod@sha/bio2_bgzf.d.o' > 'biod@sha/bio2_bgzf_writer.d.o' 'biod@sha/bio2_constants.d.o' > 'biod@sha/bio2_hashing.d.o' 'biod@sha/bio2_logger.d.o' > 'biod@sha/bio2_pileup.d.o' 'biod@sha/bio2_reads.d.o' > 'biod@sha/bio2_unpack.d.o' -shared -relocation-model=pic -L=-soname > -L=libbiod.so.0 -O -g -release -wi -L=-z -L=relro -L=-z -L=now -L=-lundead > -L=-lz > [96/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_bai_indexing.d.o' -c > ../bio/bam/bai/indexing.d > [97/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_baseinfo.d.o' -c > ../bio/bam/baseinfo.d > [98/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_cigar.d.o' -c > ../bio/bam/cigar.d > [99/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_constants.d.o' -c > ../bio/bam/constants.d > [100/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_iontorrent_flowcall.d.o' -c > ../bio/bam/iontorrent/flowcall.d > [101/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_iontorrent_flowindex.d.o' -c > ../bio/bam/iontorrent/flowindex.d > [102/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_md_core.d.o' -c > ../bio/bam/md/core.d > [103/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/test_unittests.d.o' -c > ../test/unittests.d > [104/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_md_operation.d.o' -c > ../bio/bam/md/operation.d > [105/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_md_parse.d.o' -c > ../bio/bam/md/parse.d > [106/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_md_reconstruct.d.o' -c > ../bio/bam/md/reconstruct.d > [107/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_multireader.d.o' -c > ../bio/bam/multireader.d > [108/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_pileup.d.o' -c > ../bio/bam/pileup.d > [109/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_randomaccessmanager.d.o' -c > ../bio/bam/randomaccessmanager.d > [110/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_read.d.o' -c > ../bio/bam/read.d > [111/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_readrange.d.o' -c > ../bio/bam/readrange.d > [112/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_reader.d.o' -c > ../bio/bam/reader.d > [113/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_reference.d.o' -c > ../bio/bam/reference.d > [114/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_region.d.o' -c > ../bio/bam/region.d > [115/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_referenceinfo.d.o' -c > ../bio/bam/referenceinfo.d > [116/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_snpcallers_simple.d.o' > -c ../bio/bam/snpcallers/simple.d > [117/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_snpcallers_maq.d.o' -c > ../bio/bam/snpcallers/maq.d > [118/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_splitter.d.o' -c > ../bio/bam/splitter.d > [119/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_tagvalue.d.o' -c > ../bio/bam/tagvalue.d > [120/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_utils_array.d.o' -c > ../bio/bam/utils/array.d > [121/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_utils_graph.d.o' -c > ../bio/bam/utils/graph.d > [122/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_thirdparty_msgpack.d.o' -c > ../bio/bam/thirdparty/msgpack.d > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-header`, use '-transition=intpromote' switch or > `-cast(int)(header)` > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-header`, use '-transition=intpromote' switch or > `-cast(int)(header)` > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-cast(byte)-header`, use '-transition=intpromote' switch or > `-cast(int)(cast(byte)-header)` > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-header`, use '-transition=intpromote' switch or > `-cast(int)(header)` > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-cast(short)-header`, use '-transition=intpromote' switch or > `-cast(int)(cast(short)-header)` > ../bio/bam/thirdparty/msgpack.d(2035): Deprecation: integral promotion not > done for `-header`, use '-transition=intpromote' switch or > `-cast(int)(header)` > [123/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_utils_value.d.o' -c > ../bio/bam/utils/value.d > [124/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_utils_samheadermerger.d.o' -c > ../bio/bam/utils/samheadermerger.d > [125/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_validation_samheader.d.o' -c > ../bio/bam/validation/samheader.d > [126/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_bam_writer.d.o' -c > ../bio/bam/writer.d > [127/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_base.d.o' -c > ../bio/core/base.d > [128/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_bgzf_block.d.o' -c > ../bio/core/bgzf/block.d > [129/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_bgzf_chunk.d.o' -c > ../bio/core/bgzf/chunk.d > [130/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_bam_validation_alignment.d.o' -c > ../bio/bam/validation/alignment.d > [131/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_bgzf_compress.d.o' -c > ../bio/core/bgzf/compress.d > [132/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_call.d.o' -c > ../bio/core/call.d > [133/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_fastq.d.o' -c > ../bio/core/fastq.d > [134/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_fasta.d.o' -c > ../bio/core/fasta.d > [135/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_genotype.d.o' -c > ../bio/core/genotype.d > [136/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_region.d.o' -c > ../bio/core/region.d > [137/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_kmer.d.o' -c > ../bio/core/kmer.d > [138/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_sequence.d.o' -c > ../bio/core/sequence.d > [139/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_algo.d.o' -c > ../bio/core/utils/algo.d > [140/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_tinymap.d.o' -c > ../bio/core/tinymap.d > [141/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_exception.d.o' > -c ../bio/core/utils/exception.d > [142/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_bylinefast.d.o' > -c ../bio/core/utils/bylinefast.d > [143/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_format.d.o' -c > ../bio/core/utils/format.d > [144/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_memoize.d.o' -c > ../bio/core/utils/memoize.d > [145/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_outbuffer.d.o' > -c ../bio/core/utils/outbuffer.d > [146/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_roundbuf.d.o' > -c ../bio/core/utils/roundbuf.d > [147/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_stream.d.o' -c > ../bio/core/utils/stream.d > [148/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_core_utils_switchendianness.d.o' -c > ../bio/core/utils/switchendianness.d > [149/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_range.d.o' -c > ../bio/core/utils/range.d > [150/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_zlib.d.o' -c > ../bio/core/utils/zlib.d > [151/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_maf_block.d.o' -c > ../bio/maf/block.d > [152/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_core_utils_tmpfile.d.o' -c > ../bio/core/utils/tmpfile.d > [153/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_maf_parser.d.o' -c > ../bio/maf/parser.d > [154/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_maf_reader.d.o' -c > ../bio/maf/reader.d > [155/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sam_reader.d.o' -c > ../bio/sam/reader.d > [156/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sam_header.d.o' -c > ../bio/sam/header.d > [157/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_sam_utils_recordparser.d.o' -c > ../bio/sam/utils/recordparser.d > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(52): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(60): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(69): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(77): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(83): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(132): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(164): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(177): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(189): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(222): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(252): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > sam_alignment.rl(409): Warning: statement is not reachable > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > [158/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_constants.d.o' -c > ../bio/sff/constants.d > [159/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_index.d.o' -c > ../bio/sff/index.d > [160/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_read.d.o' -c > ../bio/sff/read.d > [161/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest > -of='biod_test@exe/bio_sam_utils_fastrecordparser.d.o' -c > ../bio/sam/utils/fastrecordparser.d > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > sam_alignment.rl(52): Warning: statement is not reachable > sam_alignment.rl(60): Warning: statement is not reachable > sam_alignment.rl(69): Warning: statement is not reachable > sam_alignment.rl(77): Warning: statement is not reachable > sam_alignment.rl(83): Warning: statement is not reachable > sam_alignment.rl(132): Warning: statement is not reachable > sam_alignment.rl(164): Warning: statement is not reachable > sam_alignment.rl(177): Warning: statement is not reachable > sam_alignment.rl(189): Warning: statement is not reachable > sam_alignment.rl(222): Warning: statement is not reachable > sam_alignment.rl(252): Warning: statement is not reachable > sam_alignment.rl(409): Warning: statement is not reachable > sam_alignment.rl(51): Warning: statement is not reachable > sam_alignment.rl(59): Warning: statement is not reachable > sam_alignment.rl(68): Warning: statement is not reachable > sam_alignment.rl(76): Warning: statement is not reachable > sam_alignment.rl(82): Warning: statement is not reachable > sam_alignment.rl(131): Warning: statement is not reachable > sam_alignment.rl(163): Warning: statement is not reachable > sam_alignment.rl(176): Warning: statement is not reachable > sam_alignment.rl(188): Warning: statement is not reachable > sam_alignment.rl(221): Warning: statement is not reachable > sam_alignment.rl(250): Warning: statement is not reachable > sam_alignment.rl(407): Warning: statement is not reachable > [162/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_reader.d.o' -c > ../bio/sff/reader.d > [163/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_utils_roundup.d.o' -c > ../bio/sff/utils/roundup.d > [164/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_readrange.d.o' -c > ../bio/sff/readrange.d > [165/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio_sff_writer.d.o' -c > ../bio/sff/writer.d > [166/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_bam_header.d.o' -c > ../bio2/bam/header.d > [167/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_bam_writer.d.o' -c > ../bio2/bam/writer.d > [168/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_bam_reader.d.o' -c > ../bio2/bam/reader.d > [169/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_bgzf.d.o' -c > ../bio2/bgzf.d > [170/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_constants.d.o' -c > ../bio2/constants.d > [171/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_hashing.d.o' -c > ../bio2/hashing.d > [172/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_logger.d.o' -c > ../bio2/logger.d > [173/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_bgzf_writer.d.o' -c > ../bio2/bgzf_writer.d > [174/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_reads.d.o' -c > ../bio2/reads.d > [175/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_pileup.d.o' -c > ../bio2/pileup.d > [176/177] ldc2 -I=biod_test@exe -I=. -I=.. -I/usr/include/d -enable-color -O > -g -release -wi -unittest -of='biod_test@exe/bio2_unpack.d.o' -c > ../bio2/unpack.d > [177/177] ldc2 -of=biod_test 'biod_test@exe/test_unittests.d.o' > 'biod_test@exe/bio_bam_abstractreader.d.o' > 'biod_test@exe/bio_bam_bai_bin.d.o' 'biod_test@exe/bio_bam_baifile.d.o' > 'biod_test@exe/bio_bam_bai_indexing.d.o' 'biod_test@exe/bio_bam_baseinfo.d.o' > 'biod_test@exe/bio_bam_cigar.d.o' 'biod_test@exe/bio_bam_constants.d.o' > 'biod_test@exe/bio_bam_iontorrent_flowcall.d.o' > 'biod_test@exe/bio_bam_iontorrent_flowindex.d.o' > 'biod_test@exe/bio_bam_md_core.d.o' 'biod_test@exe/bio_bam_md_operation.d.o' > 'biod_test@exe/bio_bam_md_parse.d.o' > 'biod_test@exe/bio_bam_md_reconstruct.d.o' > 'biod_test@exe/bio_bam_multireader.d.o' 'biod_test@exe/bio_bam_pileup.d.o' > 'biod_test@exe/bio_bam_randomaccessmanager.d.o' > 'biod_test@exe/bio_bam_read.d.o' 'biod_test@exe/bio_bam_reader.d.o' > 'biod_test@exe/bio_bam_readrange.d.o' 'biod_test@exe/bio_bam_reference.d.o' > 'biod_test@exe/bio_bam_referenceinfo.d.o' 'biod_test@exe/bio_bam_region.d.o' > 'biod_test@exe/bio_bam_snpcallers_maq.d.o' > 'biod_test@exe/bio_bam_snpcallers_simple.d.o' > 'biod_test@exe/bio_bam_splitter.d.o' 'biod_test@exe/bio_bam_tagvalue.d.o' > 'biod_test@exe/bio_bam_thirdparty_msgpack.d.o' > 'biod_test@exe/bio_bam_utils_array.d.o' > 'biod_test@exe/bio_bam_utils_graph.d.o' > 'biod_test@exe/bio_bam_utils_samheadermerger.d.o' > 'biod_test@exe/bio_bam_utils_value.d.o' > 'biod_test@exe/bio_bam_validation_alignment.d.o' > 'biod_test@exe/bio_bam_validation_samheader.d.o' > 'biod_test@exe/bio_bam_writer.d.o' 'biod_test@exe/bio_core_base.d.o' > 'biod_test@exe/bio_core_bgzf_block.d.o' > 'biod_test@exe/bio_core_bgzf_chunk.d.o' > 'biod_test@exe/bio_core_bgzf_compress.d.o' > 'biod_test@exe/bio_core_bgzf_constants.d.o' > 'biod_test@exe/bio_core_bgzf_inputstream.d.o' > 'biod_test@exe/bio_core_bgzf_outputstream.d.o' > 'biod_test@exe/bio_core_bgzf_virtualoffset.d.o' > 'biod_test@exe/bio_core_call.d.o' 'biod_test@exe/bio_core_fasta.d.o' > 'biod_test@exe/bio_core_fastq.d.o' 'biod_test@exe/bio_core_genotype.d.o' > 'biod_test@exe/bio_core_kmer.d.o' 'biod_test@exe/bio_core_region.d.o' > 'biod_test@exe/bio_core_sequence.d.o' 'biod_test@exe/bio_core_tinymap.d.o' > 'biod_test@exe/bio_core_utils_algo.d.o' > 'biod_test@exe/bio_core_utils_bylinefast.d.o' > 'biod_test@exe/bio_core_utils_exception.d.o' > 'biod_test@exe/bio_core_utils_format.d.o' > 'biod_test@exe/bio_core_utils_memoize.d.o' > 'biod_test@exe/bio_core_utils_outbuffer.d.o' > 'biod_test@exe/bio_core_utils_range.d.o' > 'biod_test@exe/bio_core_utils_roundbuf.d.o' > 'biod_test@exe/bio_core_utils_stream.d.o' > 'biod_test@exe/bio_core_utils_switchendianness.d.o' > 'biod_test@exe/bio_core_utils_tmpfile.d.o' > 'biod_test@exe/bio_core_utils_zlib.d.o' 'biod_test@exe/bio_maf_block.d.o' > 'biod_test@exe/bio_maf_parser.d.o' 'biod_test@exe/bio_maf_reader.d.o' > 'biod_test@exe/bio_sam_header.d.o' 'biod_test@exe/bio_sam_reader.d.o' > 'biod_test@exe/bio_sam_utils_fastrecordparser.d.o' > 'biod_test@exe/bio_sam_utils_recordparser.d.o' > 'biod_test@exe/bio_sff_constants.d.o' 'biod_test@exe/bio_sff_index.d.o' > 'biod_test@exe/bio_sff_read.d.o' 'biod_test@exe/bio_sff_reader.d.o' > 'biod_test@exe/bio_sff_readrange.d.o' > 'biod_test@exe/bio_sff_utils_roundup.d.o' 'biod_test@exe/bio_sff_writer.d.o' > 'biod_test@exe/bio2_bam_header.d.o' 'biod_test@exe/bio2_bam_reader.d.o' > 'biod_test@exe/bio2_bam_writer.d.o' 'biod_test@exe/bio2_bgzf.d.o' > 'biod_test@exe/bio2_bgzf_writer.d.o' 'biod_test@exe/bio2_constants.d.o' > 'biod_test@exe/bio2_hashing.d.o' 'biod_test@exe/bio2_logger.d.o' > 'biod_test@exe/bio2_pileup.d.o' 'biod_test@exe/bio2_reads.d.o' > 'biod_test@exe/bio2_unpack.d.o' -O -g -release -wi -L=-z -L=relro -L=-z > -L=now -L=-lundead -L=-lz > dh_auto_test > cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=2 ninja test > [0/1] Running all tests. > 1/1 biod_tests FAIL 0.27 s (killed by signal > 11 SIGSEGV) > > Ok: 0 > Expected Fail: 0 > Fail: 1 > Unexpected Pass: 0 > Skipped: 0 > Timeout: 0 > > > The output from the failed tests: > > 1/1 biod_tests FAIL 0.27 s (killed by signal > 11 SIGSEGV) > > --- command --- > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test > --- stderr --- > Running unittests... > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x27)[0x7fbb8489cbf7] > /lib/x86_64-linux-gnu/libpthread.so.0(+0x12670)[0x7fbb847e5670] > /usr/lib/x86_64-linux-gnu/libphobos2-ldc-shared.so.82(_D3std11parallelism8TaskPool16tryDeleteExecuteMFPSQBwQBv12AbstractTaskZv+0xa)[0x7fbb84bc0c4a] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0x12d07e)[0x55a60eb3607e] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(rt_finalizeFromGC+0xab)[0x7fbb848c33eb] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2gc4impl12conservativeQw3Gcx5sweepMFNbZm+0x2ef)[0x7fbb848ad7bf] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2gc4impl12conservativeQw3Gcx11fullcollectMFNbbZm+0x192)[0x7fbb848aa9b2] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2gc4impl12conservativeQw3Gcx8bigAllocMFNbmKmkxC8TypeInfoZPv+0xda)[0x7fbb848ac3ca] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2gc4impl12conservativeQw14ConservativeGC__T9runLockedS_DQCeQCeQCcQCnQBs12mallocNoSyncMFNbmkKmxC8TypeInfoZPvS_DQEgQEgQEeQEp10mallocTimelS_DQFiQFiQFgQFr10numMallocslTmTkTmTxQCzZQFcMFNbKmKkKmKxQDsZQDl+0x94)[0x7fbb848a8c74] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_DThn16_2gc4impl12conservativeQw14ConservativeGC6qallocMFNbmkxC8TypeInfoZS4core6memory8BlkInfo_+0x4f)[0x7fbb848ab2df] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(gc_qalloc+0x20)[0x7fbb848afbd0] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D4core6memory2GC6qallocFNaNbmkxC8TypeInfoZSQBqQBo8BlkInfo_+0x12)[0x7fbb8489bfb2] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_d_newarrayU+0x169)[0x7fbb848c2519] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0x135dd6)[0x55a60eb3edd6] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0x14d474)[0x55a60eb56474] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0x7b043)[0x55a60ea84043] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0xda11c)[0x55a60eae311c] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x1c)[0x7fbb8489cc2c] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x32)[0x7fbb848c89f2] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x4a)[0x7fbb848ca00a] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0x7fbb848c899c] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1f)[0x7fbb848b2e6f] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(runModuleUnitTests+0x129)[0x7fbb8489ca49] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_D2rt6dmain211_d_run_mainUiPPaPUAAaZiZ6runAllMFZv+0x1b)[0x7fbb848bf0fb] > /usr/lib/x86_64-linux-gnu/libdruntime-ldc-shared.so.82(_d_run_main+0x1f6)[0x7fbb848bef46] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xeb)[0x7fbb8449909b] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/biod_test(+0x7864a)[0x55a60ea8164a] > ------- > > Full log written to > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-logs/testlog.txt > FAILED: meson-test > /usr/bin/meson test --no-rebuild --print-errorlogs > ninja: build stopped: subcommand failed. > dh_auto_test: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=2 > ninja test returned exit code 1 The full build log is available from: http://aws-logs.debian.net/2018/12/29/libbiod_0.2.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.