Package: abyss Severity: important Hi,
something is wrong with the parallel build:
$ cat /usr/lib/abyss/ABYSS-P
#!/bin/bash
echo >&2 "error: ABySS was not configured with support for MPI. For details"
echo >&2 " on compiling ABySS with MPI
suppor see:"
echo >&2 " https://github.com/bcgsc/abyss#compiling-abyss-from-source";
exit 1
Kind regards
Andreas.
-- System Information:
Debian Release: 9.6
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.9.0-6-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8),
LANGUAGE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages abyss depends on:
ii libc6 2.24-11+deb9u3
ii libgcc1 1:6.3.0-18+deb9u1
ii libgomp1 6.3.0-18+deb9u1
pn libopenmpi2 <none>
ii libsqlite3-0 3.16.2-5+deb9u1
ii libstdc++6 6.3.0-18+deb9u1
ii make 4.1-9.1
ii perl 5.24.1-3+deb9u5
abyss recommends no packages.
Versions of packages abyss suggests:
pn openmpi-bin <none>
