Package: wnpp Severity: wishlist Subject: ITP: biobambam2 -- tools for early stage alignment file processing Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : biobambam2 Version : 2.0.95 Upstream Author : German Tischler <tisch...@mpi-cbg.de> * URL : https://gitlab.com/german.tischler/biobambam2 * License : GPL-3+ Programming Lang: C++ Description : tools for early stage alignment file processing This package contains some tools for processing BAM files including . bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/biobambam2