Control: severity -1 serious Hi, I have tested the testsuite with the upstream binary (FastQC 0.11.8) and there is no error, so the testsuite is fine. This bug was probably hidden before we added the test of bam and sam files. Currently, fastqc from our package is unable to process bam and sam files which is very annoying for Buster. I guess we have to modify htsjdk-api.patch, but I admit I have no clue how to fix it. The easiest way should be to add SAMFileReader like suggested in [1]. Any suggestion?
Best, Dylan [1] https://github.com/samtools/htsjdk/issues/767#issuecomment-264843094