Package: rambo-k
Version: 1.21+dfsg-2
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu eoan ubuntu-patch
Hi Andreas,
The rambo-k package appears to support python3 upstream, so requires only a
small patch to switch it over to python3. Please consider applying the
attached patch.
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer https://www.debian.org/
[email protected] [email protected]
diff -Nru rambo-k-1.21+dfsg/debian/control rambo-k-1.21+dfsg/debian/control
--- rambo-k-1.21+dfsg/debian/control 2018-07-19 00:38:27.000000000 -0700
+++ rambo-k-1.21+dfsg/debian/control 2019-08-16 00:35:46.000000000 -0700
@@ -7,7 +7,7 @@
javahelper,
default-jdk,
dh-python,
- python-all,
+ python3-all,
libcommons-cli-java,
liblog4j1.2-java
Standards-Version: 4.1.5
@@ -18,9 +18,9 @@
Package: rambo-k
Architecture: all
Depends: ${java:Depends},
- ${python:Depends},
+ ${python3:Depends},
${misc:Depends},
- python-sklearn
+ python3-sklearn
Description: Read Assignment Method Based On K-mers
RAMBO-K is a tool for rapid and sensitive removal of background sequences
from Next Generation Sequencing data.
diff -Nru rambo-k-1.21+dfsg/debian/patches/python3.patch
rambo-k-1.21+dfsg/debian/patches/python3.patch
--- rambo-k-1.21+dfsg/debian/patches/python3.patch 1969-12-31
16:00:00.000000000 -0800
+++ rambo-k-1.21+dfsg/debian/patches/python3.patch 2019-08-16
00:35:46.000000000 -0700
@@ -0,0 +1,10 @@
+Index: rambo-k-1.21+dfsg/RAMBOK.py
+===================================================================
+--- rambo-k-1.21+dfsg.orig/RAMBOK.py
++++ rambo-k-1.21+dfsg/RAMBOK.py
+@@ -1,4 +1,4 @@
+-#!/usr/bin/env python
++#!/usr/bin/env python3
+ import os
+ import argparse
+ import simulate_reads
diff -Nru rambo-k-1.21+dfsg/debian/patches/series
rambo-k-1.21+dfsg/debian/patches/series
--- rambo-k-1.21+dfsg/debian/patches/series 1969-12-31 16:00:00.000000000
-0800
+++ rambo-k-1.21+dfsg/debian/patches/series 2019-08-16 00:35:46.000000000
-0700
@@ -0,0 +1 @@
+python3.patch
diff -Nru rambo-k-1.21+dfsg/debian/rules rambo-k-1.21+dfsg/debian/rules
--- rambo-k-1.21+dfsg/debian/rules 2018-07-19 00:38:27.000000000 -0700
+++ rambo-k-1.21+dfsg/debian/rules 2019-08-16 00:35:46.000000000 -0700
@@ -5,7 +5,7 @@
include /usr/share/dpkg/default.mk
%:
- dh $@ --with javahelper --with python2
+ dh $@ --with javahelper --with python3
override_dh_auto_build:
CLASSPATH=/usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/:ReadClassifier_eclipse/src/
jh_build classifier.jar ReadClassifier_eclipse
