Package: wnpp Severity: wishlist Subject: ITP: libbio-db-gff-perl -- Storage and retrieval of sequence annotation data Package: wnpp Owner: Michael R. Crusoe <michael.cru...@gmail.com> Severity: wishlist
* Package name : libbio-db-gff-perl Version : 1.7.3 Upstream Author : Copyright: (c) 2001-2003, 2005, 2008 Cold Spring Harbor Laboratory * URL : https://metacpan.org/release/Bio-DB-GFF * License : Artistic Programming Lang: Perl Description : Storage and retrieval of sequence annotation data Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. . The following operations are supported by this module: . - retrieving a segment of sequence based on the ID of a landmark . - retrieving the DNA from that segment . - finding all annotations that overlap with the segment . - finding all annotations that are completely contained within the segment . - retrieving all annotations of a particular type, either within a segment, or globally . - conversion from absolute to relative coordinates and back again, using any arbitrary landmark for the relative coordinates . - using a sequence segment to create new segments based on relative offsets Remark: This package is maintained by Michael R. Crusoe at https://salsa.debian.org/med-team/libbio-db-gff-perl
