Hi Peter, On Mon, Dec 02, 2019 at 03:42:21PM +0000, Peter Cock wrote: > This was included in Biopython 1.74 and 1.75, yet your copy of > Tests/test_psw.py > would seem to date from Biopython 1.73 or older. > > I suspect an old cached copy of the test folder is largely to blame?
Arghhh, sorry for wasting your time. The test examples are in python-biopython-doc package which I forgot to update on my local machine. I just get: ====================================================================== ERROR: test_gzip_fasta (test_SeqIO.TestZipped) Testing FASTA with gzip. ---------------------------------------------------------------------- Traceback (most recent call last): File "/tmp/autopkgtest.vFO6HI/autopkgtest_tmp/Tests/test_SeqIO.py", line 156, in test_gzip_fasta with gzip.open("Fasta/flowers.pro.gz", mode) as handle: File "/usr/lib/python2.7/gzip.py", line 34, in open return GzipFile(filename, mode, compresslevel) File "/usr/lib/python2.7/gzip.py", line 94, in __init__ fileobj = self.myfileobj = __builtin__.open(filename, mode or 'rb') IOError: [Errno 2] No such file or directory: 'Fasta/flowers.pro.gz' ====================================================================== (now with the real data). Kind regards Andreas. -- http://fam-tille.de