Source: python-pysam Version: 0.15.2+ds-2 Severity: serious Justification: ftbfs Tags: ftbfs sid bullseye
Dear maintainer, Your package is part of the htslib 1.10.2 transition. I tried to binNMU your package but it fails to build from source. Please have a look. Paul https://buildd.debian.org/status/package.php?p=python-pysam Tail of log for python-pysam on amd64: 24840 | __pyx_t_12 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 873, __pyx_L1_error) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/pysam/libcvcf.o -L/<<PKGBUILDDIR>>/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -L/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam -lz -lhts -lchtslib.cpython-37m-x86_64-linux-gnu -lcutils.cpython-37m-x86_64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pysam/build/pysam/libcvcf.cpython-37m-x86_64-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/<<PKGBUILDDIR>>' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/<<PKGBUILDDIR>>/tests/pysam_data' samtools faidx ex1.fa samtools import ex1.fa.fai ex1.sam.gz ex1.bam make[2]: *** [Makefile:56: ex1.bam] Segmentation fault make[2]: *** Deleting file 'ex1.bam' make[2]: Leaving directory '/<<PKGBUILDDIR>>/tests/pysam_data' make[1]: *** [debian/rules:51: pysam_data.all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:24: build-arch] Error 2
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