Source: pbcopper Version: 1.3.0+dfsg-1 Severity: serious Justification: ftbfs Tags: ftbfs sid bullseye
Dear maintainer, Your package fails to build from source on all buildds except x32. Your package is involved in the pbbam and htslib transitions and blocking progress. Please have a look. Paul https://buildd.debian.org/status/package.php?p=pbcopper Tail of log for pbcopper on arm64: cc -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c11 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -MD -MQ 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -MF 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o.d' -o 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -c ../src/align/cssw/ssw.c ../src/align/cssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory 38 | #include <emmintrin.h> | ^~~~~~~~~~~~~ compilation terminated. [9/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -c ../src/align/LinearAlignment.cpp [10/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -c ../src/align/BandedChainAlignment.cpp [11/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -c ../src/align/AffineAlignment.cpp [12/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -c ../src/align/SparseAlignment.cpp [13/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -c ../src/align/PairwiseAlignment.cpp [14/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -c ../src/align/FindSeeds.cpp [15/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -c ../src/align/ChainSeeds.cpp ninja: build stopped: subcommand failed. dh_auto_build: cd build && LC_ALL=C.UTF-8 ninja -j8 -v returned exit code 1 make: *** [debian/rules:10: build-arch] Error 255
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