I've merged and pushed all my changes, the build finishes and the regular +
autopkgtests pass.

TODO:
1. Send more patches upstream
2. Review the following patches and see if we can eliminate even more code
copies:
#use_packaged_vcflib  # 1.0.0+dfsg-1 is incompatible with the bundled htslib
#use_packaged_htslib  # waiting on
https://github.com/samtools/htslib/pull/904/files or similiar to be merged
& new htslib release
#use_packaged_vw # debian package is out of date, missing
array_parameters.h, and not in testing/stable
#use_packaged_sdsl # fails many tests, local copy is a newer snapshot than
Debian's
#use_packaged_protobuf ?

On Mon, Jan 13, 2020 at 11:20 AM Michael Crusoe <[email protected]>
wrote:

> I have 1.20.0 in my local repository, not yet pushed
>
> According to my build logs that did not succeed either.
>
> I'll update my local copy to 1.21 as well, and then I'll compare the patch
> modifications; pushing up the diff if that seems useful
>
> On Sun, Jan 12, 2020 at 11:43 AM Andreas Tille <[email protected]>
> wrote:
>
>> Hi Michael,
>>
>> On Fri, Sep 06, 2019 at 02:16:16PM +0900, Michael R. Crusoe wrote:
>> > * Package name    : vg
>> >   Version         : 1.18.0+ds
>>
>> by chance I stumbled upon that package.  I have no real interest in it
>> but I was wondering about the status of this ITP.  Upstream is meanwhile
>> at 1.21.0 and thus I did an upgrade (including adapting the many patched
>> to the build system.  I pushed my changed but I need to admit I've
>> broken the build.
>>
>> Before I investigate in fixing the build I wonder what might be your
>> plan with this package.
>>
>> Kind regards
>>
>>      Andreas.
>>
>> --
>> http://fam-tille.de
>>
>
>
> --
> Michael R. Crusoe
>


-- 
Michael R. Crusoe

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