Source: scikit-learn, python-skbio Control: found -1 scikit-learn/0.22.1+dfsg-1 Control: found -1 python-skbio/0.5.5-3 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks needs-update
Dear maintainers, With a recent upload of scikit-learn the autopkgtest of python-skbio fails in testing when that autopkgtest is run with the binary packages of scikit-learn from unstable. It passes when run with only packages from testing. In tabular form: pass fail scikit-learn from testing 0.22.1+dfsg-1 python-skbio from testing 0.5.5-3 all others from testing from testing I copied some of the output at the bottom of this report. Currently this regression is blocking the migration of scikit-learn to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul PS: scikit-learn also FTBFS on several architectures. [1] https://qa.debian.org/excuses.php?package=scikit-learn https://ci.debian.net/data/autopkgtest/testing/amd64/p/python-skbio/4266056/log.gz =================================== FAILURES =================================== ______________ [doctest] skbio.stats.distance._permdisp.permdisp _______________ 129 ... ['s1', 's2', 's3', 's4', 's5', 's6']) 130 >>> grouping = ['G1', 'G1', 'G1', 'G2', 'G2', 'G2'] 131 132 Run PERMDISP using 99 permutations to caluculate the p-value: 133 134 >>> from skbio.stats.distance import permdisp 135 >>> import numpy as np 136 >>> #make output deterministic, should not be included during normal use 137 >>> np.random.seed(0) 138 >>> permdisp(dm, grouping, permutations=99) Differences (unified diff with -expected +actual): @@ -4,5 +4,5 @@ number of groups 2 test statistic 1.03296 -p-value 0.35 +p-value 0.29 number of permutations 99 Name: PERMDISP results, dtype: object
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