Hello, I tryed to unbrand the lzf library but it end up with failing unit tests
I do not know the internals of liblzf.
Timo Röhling can you have a look at this issue ?
Cheers
Frederic
It seems that the embeded version of lzf and the one from your liblzf package
are different.
test_filter (bitshuffle.tests.test_h5filter.TestFilter) ... ERROR
test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter) ... ERROR
test_with_compression (bitshuffle.tests.test_h5filter.TestFilter) ... ERROR
test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins) ... ERROR
test_regression (bitshuffle.tests.test_regression.TestAll) ... ok
======================================================================
ERROR: test_filter (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py",
line 26, in test_filter
f = h5py.File(fname)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 387, in __init__
fid = make_fid(name, mode, userblock_size,
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 173, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 88, in
h5py._debian_h5py_serial.h5f.open
OSError: Unable to open file (unable to open file: name =
'tmp_test_filters.h5', errno = 2, error message = 'No such file or directory',
flags = 0, o_flags = 0)
======================================================================
ERROR: test_with_block_size (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py",
line 46, in test_with_block_size
f = h5py.File(fname)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 387, in __init__
fid = make_fid(name, mode, userblock_size,
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 173, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 88, in
h5py._debian_h5py_serial.h5f.open
OSError: Unable to open file (unable to open file: name =
'tmp_test_filters.h5', errno = 2, error message = 'No such file or directory',
flags = 0, o_flags = 0)
======================================================================
ERROR: test_with_compression (bitshuffle.tests.test_h5filter.TestFilter)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5filter.py",
line 68, in test_with_compression
f = h5py.File(fname)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 387, in __init__
fid = make_fid(name, mode, userblock_size,
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 173, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 88, in
h5py._debian_h5py_serial.h5f.open
OSError: Unable to open file (unable to open file: name =
'tmp_test_filters.h5', errno = 2, error message = 'No such file or directory',
flags = 0, o_flags = 0)
======================================================================
ERROR: test_plugins (bitshuffle.tests.test_h5plugin.TestFilterPlugins)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_bitshuffle/build/bitshuffle/tests/test_h5plugin.py",
line 37, in test_plugins
f = h5py.File(fname)
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 387, in __init__
fid = make_fid(name, mode, userblock_size,
File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py",
line 173, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_debian_h5py_serial/_objects.pyx", line 54, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/_objects.pyx", line 55, in
h5py._debian_h5py_serial._objects.with_phil.wrapper
File "h5py/_debian_h5py_serial/h5f.pyx", line 88, in
h5py._debian_h5py_serial.h5f.open
OSError: Unable to open file (unable to open file: name =
'tmp_test_filters.h5', errno = 2, error message = 'No such file or directory',
flags = 0, o_flags = 0)
----------------------------------------------------------------------
Ran 61 tests in 1.380s
FAILED (errors=4)
