Hi, On Fri, 29 May 2020, 01:08 Andreas Tille, <andr...@an3as.eu> wrote:
> Hi Moritz, > > On Thu, May 28, 2020 at 08:48:41PM +0200, Moritz Mühlenhoff wrote: > > > > JFTR, this is now fixed upstream in 2.5.0 and later: > > http://kissplice.prabi.fr/download/: > > > > -------------------------------------- > > Kissplice Version 2.5.0 (2020-04-06) > > > > New features: > > Now compatible with python3 > > -------------------------------------- > > Thanks for the hint. Unfortunately there are remaining issues > in build time test and autopkgtest. even of version 2.5.1 .:-( > I've Fixed the autopkgtest For the failing build tests: this is what I observe - this try matching strings containing a few values with kissplice result. For instance, this is one of the failures: Expected: 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 69 found Actual: 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 22 found There's definitely a difference between the outputs of previous kissplice version and current kissplice version, I tried this manually as well. Just _maybe_, the upstream data has been changed, and the correct data hasn't been injected; or the implementation has changed in version, 2.5.1and this should output 22, but the tests haven't been changed accordingly ; or maybe this is a bug with kissplice itself. In either case, I'm not really about this. Maybe we should ask upstream about it. Thanks and regards Nilesh
